From:  Emerging targets and gene-based therapeutics in diabetic foot ulcer: a comprehensive review

 Emerging genes as therapeutic targets for gene therapy in diabetic foot ulcers (DFUs).

TargetModelStrategy/approachOutcome
PGI1 (integron class 1 gene)
[120]
50 specimens from DFU patientsSample analysis revealed significantly increased integron class 1 gene in Proteus mirabilis isolated from diabetic foot infections.The analysis of 50 DFU specimens showed a high prevalence of class 1 integrons among patients with P. mirabilis isolates.
The PGI1 pathway may have therapeutic significance.
CXCR4 [110]
CXCR4 [121]
GEO database analysis (DFU patient data)The study identified differentially expressed genes and performed enrichment analysis to reveal the related biological pathways.GEO database analysis revealed an important role of CXCR4 and its related pathways in the pathogenesis of DFUs [110]. CXCR4 also emerges as a potential target for intervention, along with PGI2, CSF3R, and CSF2RA, in clinical trials analysis of DFU [121].
CXCR4 may be a potential target in DFU management.
Hippo-YAP signaling pathway [122]Single-cell RNA sequencing of tissues from a diabetic mouse modelMouse models were used to induce ulcers, and tissues were characterized histologically. Sequencing analysis was conducted to investigate the role of the TFAP2A-LIFR-Hippo-YAP signaling axis in regulating macrophage M2 polarization and its critical function in DFU wound healing.Bulk and single-cell RNA sequencing of diabetic wounds revealed the critical role of macrophage M2 polarization mediated by TFAP2A, a central regulatory gene in macrophage function, in DFU healing.
TFAP2A-LIFR-Hippo-YAP signaling axis accelerates DFU wound healing through the induction of macrophage M2 polarization.
The immunoregulatory role of TFAP2A in DFU makes it a promising therapeutic target.
YAP-TAZ signaling [123]Tissues from the ear wounds of diabetic miceGene and protein expression analyses on control and diabetic tissues.
The aim was to evaluate the cellular regulation of Hippo and related pathway targets after plasma treatment.
The analysis of ear wounds in diabetic mice treated with cold plasma showed that cold plasma accelerated healing by increasing re-epithelialization and modifying extracellular matrix components involving YAP-TAZ signaling.
YAP-TAZ signaling and activated TGF-β-regulated cellular regulation after gas plasma treatment have therapeutic potential, and YAP-TAZ is an attractive target.
SCUBE1 and RNF103-CHMP3 [124]GEO database analysis of 15 DFU human samplesDifferential gene analysis.
Enrichment analysis.
Protein-protein interaction network analysis.
SCUBE1 and RNF103-CHMP3, identified as key genes significantly associated with DFU, may be potential biomarkers and therapeutic targets.

CXCR4: C-X-C motif chemokine receptor 4; GEO: Gene Ontology; Hippo-YAP: Hippo-associated factors, the yes-associated protein; LIFR: leukemia inhibitory factor receptor; TFAP2A: transcription factor AP-2 alpha; TGF: transforming growth factor; YAP-TAZ: yes-associated protein-transcriptional co-activator with PDZ binding motif.