From:  Epigenetic and metabolic reprogramming in autoimmune rheumatology: toward immune tolerance reprogramming

 Disease-specific roles of epigenetic and metabolic therapeutics in autoimmune rheumatology.

DiseaseDominant pathogenic axisMost relevant therapeutic approachesRationale for therapeutic relevanceKey translational considerations
RAStroma-immune coupling; Th17/Treg imbalance; FLS inflammatory memoryAMPK activators, BET inhibitors, EZH2 inhibitors, nanoparticle-targeted stromal delivery, CAR-Tregs/tolDCsTarget synovial glycolysis, stromal epigenetic imprinting, and effector-regulatory imbalanceSynovial penetration, chronic-use safety, biomarker-guided patient selection
SLEInterferon-driven immune activation; B-cell and pDC dysfunctionmTOR inhibitors, NAD+-targeting strategies, HDAC inhibitors, EZH2 inhibitors, B-cell-directed metabolic modulationTarget interferon-associated chromatin activation, B-cell metabolic rewiring, and systemic immune instabilityHeterogeneous disease activity, systemic toxicity risk, stratification by interferon/metabolic signatures
Sjögren’s syndromeEpithelial-immune crosstalk; glandular inflammatory activationMetabolic modulators targeting epithelial stress, epigenetic modulators, B-cell/tolDC-based strategiesTarget epithelial glycolytic activation, interferon-responsive chromatin states, and local ectopic immune activationLimited tissue-specific delivery options, fewer disease-specific trials, need for gland-focused biomarkers
SScFibroblast-driven fibrosis; profibrotic chromatin lock-inPPAR-γ agonists, AMPK activators, antifibrotic metabolic modulators, EZH2/epigenetic targeting, targeted delivery platformsTarget fibroblast glycolytic-fibrotic reprogramming and stable profibrotic epigenetic statesNeed for early intervention, fibrosis reversibility limits, and long-term safety in chronic disease

AMPK: AMP-activated protein kinase; BET: bromodomain and extra-terminal; CAR-Tregs: chimeric antigen receptor regulatory T cells; EZH2: enhancer of zeste homolog 2; FLS: fibroblast-like synoviocytes; HDAC: histone deacetylase; mTOR: mechanistic target of rapamycin; pDC: plasmacytoid dendritic cell; PPAR-γ: peroxisome proliferator-activated receptor gamma; RA: rheumatoid arthritis; SLE: systemic lupus erythematosus; SSc: systemic sclerosis; tolDCs: tolerogenic dendritic cells.