From:  Cutaneous lupus erythematosus: insights from molecular pathogenesis to targeted therapies

 Genes associated with cutaneous lupus erythematosus (CLE).

GeneAssociated subtypeGene function (expression/activity)Reference(s)
HLA
HLA-DRB1*04DLEHigh[40]
HLA-B8DLE, SCLE (annular)High[4143]
HLA-DR3SCLE (annular)High[42, 43]
HLA-DR2SCLEHigh[43]
HLA-DR5SCLE (annular)Low[42]
HLA-DQA1NLE (with an allele with glutamine at position 34 of the first domain); CCLE (with the OI02 allele)High[44, 45]
HLA-DRw6CLEHigh[41]
Non-HLA genes
Genetic polymorphisms
TREX1CLE, SLE, FCLLow activity[39, 4650]
MICA/BCLE, SLEHigh
IZKFCLE, SLEHigh
SAMHD1CLE, FCLLow activity[5153]
STINGFCLHigh activity
PerforinSCLELow
ITGAMDLE (with loci encoding integrin αM, also known as CD11b)High[54]
FCGRAMalar rash (with loci encoding low-affinity IgG Fc region receptor IIa)High[55]
IFN-κCLE (with a gene encoding IFN-κ)High[56]
Complement factors
Complement factor C1qASCLELow[57]
Complement factor C2SCLE, DLELow[51, 58, 59]
C4DLE (with the null C4 allele B*Q0)Low[60]

DLE: discoid lupus erythematosus; SCLE: subacute CLE; NLE: neonatal LE; FCL: familial chilblain lupus erythematosus; CCLE: chronic CLE; SLE: systemic lupus erythematosus; IFN: interferon.