From:  Aldh1a1 and additional markers of dopamine cell heterogeneity in substantia nigra and ventral tegmental area identified as preserved in two transgenic α-synuclein mouse models of neurodegenerative disease

 Analysis of m/hSnca and m/Snca probe distribution in serial brain sections of Thy1-h[A30P]αSyn and Thy1-h[wt]αSyn mouse lines. Results obtained in FISH; transgenic mice compared to control mice. The mSnca probe represents endogenous, mouse-selective Snca mRNA; the m/hSnca probe represents both mouse and human Snca CDS [thus revealing both endogenous (mouse) and transgenic (human) Snca mRNA] (Figure 1 for details). By comparing the labeling results obtained in FISH analysis in which the two Snca probes were implemented in control and transgenic mice for each transgenic mouse line, the same patterns are observed with the m/hSnca probe in control mice and the mSnca probe in both control and transgenic mice, while detection beyond this, as identified using the h/mSnca probe in transgenic mice, identifies transcriptional effects induced by the transgenic construct in transgenic mice

Regionsm/hSncamSncam/hSncamSnca
ControlThy1-h[A30P]αSynControlThy1-h[A30P]αSynControlThy1-h[wt]αSynControlThy1-h[wt]αSyn
Anterior olfactory areaYes↑YesYesYes↑YesYes
Granule cell layer of the olfactory bulbYesSameYesYesNoYesNANA
Mitral cell layer of the olfactory bulbYes↑YesYesYes↑YesYes
Glomerular layer of the olfactory bulbNoYesNANAYesSameYesYes
Cortex (including all its divisions)Yes↑YesYesYes↑YesYes
Tenia tectaYes↑YesYesYes↑YesYes
Endopiriform claustrumYes↑YesYesYes↑YesYes
Olfactory tubercleYes↑YesYesYes↑YesYes
Ventral pallidumYes↑YesYesYes↑YesYes
Ventral striatumYes↑YesYesYes↑YesYes
Dorsal striatumYesSameYesYesYes↑YesYes
Septal hippocampal nucleusNoYesNANAYes↑YesYes
Lateral septumYes↑YesYesYes↑YesYes
Medium septumYes↑YesYesYes↑YesYes
Nucleus of the vertical limb of the diagonal bandYes↑YesYesYes↑YesYes
Lateral preoptic areaYes↑YesYesYes↑YesYes
Nucleus of the horizontal limb of the diagonal bandYes↑YesYesYes↑YesYes
Medio preoptic areaYes↑YesYesYes↑YesYes
Medial forebrain bundle areaYes↑YesYesYes↑YesYes
Bed nucleus of the stria terminalisYes↑YesYesYes↑YesYes
Paraventricular thalamic nucleusYes↑YesYesYes↑YesYes
Globus pallidusYes↑YesYesYes↑YesYes
Thalamus (not including intermediodorsal nucleus)Yes↑YesYesYes↑YesYes
Intermediodorsal thalamic nucleusYes↑YesYesYes↑YesYes
Hypothalamus (not including ventromedial nucleus)Yes↑YesYesYes↑YesYes
Ventromedial hypothalamic nucleusYes↑YesYesYes↑YesYes
AmygdalaYes↑YesYesYes↑YesYes
HippocampusYes↑YesYesYes↑YesYes
Lateral habenulaNoYesNANAYes↑YesYes
Medial lateral habenulaYesSameYesYesYesSameYesYes
Subthalamic nucleusYes↑YesYesYes↑YesYes
Zona incertaYes↑YesYesYes↑YesYes
Mammillary nucleusYes↑YesYesYes↑YesYes
Geniculate nucleusYes↑YesYesYes↑YesYes
Red nucleusYes↑YesYesYes↑YesYes
Reticular formationYes↑YesYesYes↑YesYes
Superior colliculusYes↑YesYesYes↑YesYes
Retro-mammillary nucleusYes↑YesYesYes↑YesYes
Posterior hypothalamic areaYes↑YesYesYes↑YesYes
Anterior pretectal nucleusYes↑YesYesYes↑YesYes
Interstitial nucleus of CajalYes↑YesYesYes↑YesYes
Substantia nigra pars reticulataYes↑YesYesYes↑YesYes
Ventral tegmental areaYes↑YesYesYes↑YesYes
Substantia nigra pars compactaYes↑YesYesYes↑YesYes
Periaqueductal grayYes↑YesYesYes↑YesYes
Oculomotor nucleusYes↑YesYesYes↑YesYes
Pontine nucleusYes↑YesYesYes↑YesYes
Interpeduncular nucleusNoYesNANANoYesNANA
Sub-brachial nucleusNoYesNANAYes↑YesYes
Retro-rubral fieldYes↑YesYesYes↑YesYes
Median raphe nucleusYes↑YesYesYes↑YesYes
Dorsal raphe nucleusYes↑YesYesYes↑YesYes

Yes: detection of labeling; ↑: increased detection as compared to control mice; Same: same detection as in control mice (i.e. no difference transgene vs. control); NA: not applicable due to lack of detection in both control and transgenic mice; No: no detection of labeling in control mice