Late 2020 (first detected in travelers from Brazil in Japan)
Reduced neutralization observed with Pfizer-BioNTech and Moderna vaccines.
Delta (B.1.617.2)
Severe headacheConfusion
Dizziness (rare)
Severe sore throatEar painReduced loss of smell
Late 2021 (first detected in India)
Pfizer and Moderna vaccines showed reduced immune response due to L452R mutation. Improved transmissibility linked to spike protein mutations.
Omicron (BA.1, BA.2, BA.4, BA.5)
Mental fatigueBrain fog
Dizziness (less common)
Predominant sore throatLess frequent loss of taste/smell
Late 2021 (first detected in multiple regions)
Vaccines and prior immunity appear to mitigate the severe effects. Less anosmia due to differences. In cellular tropism and reduced inflammatory dysregulation.
Omicron (XBB, BQ.1)
HeadacheBrain fogPeripheral neuropathy
Dizziness (less common)
Dominant nasal symptomsDry cough
Late 2022 (first detected in multiple regions)
Updated booster vaccines were introduced in mid-2022 to target Omicron subvariants.
The authors declare that they have no conflicts of interest.
Ethical approval
This study was approved by the Sapienza University of Rome Hospital Ethical Committee (Ref. 6536), and all the study procedures followed the Helsinki Declaration of 2013, for human rights and experimentation.
Consent to participate
Informed consent was not needed due to the retrospective nature of this study.
Consent to publication
Not required.
Availability of data and materials
The datasets that support the findings of this study are available from the corresponding author on reasonable request.
Funding
We acknowledge financial support under the National Recovery and Resilience Plan (NRRP), Mission 4, Component 2, Investment 1.1, Call for tender No. 104 published on 2.2.2022 by the Italian Ministry of University and Research (MUR), funded by the European Union—NextGenerationEU—Project Title—Mapping NEUROCOVID via neurobiology and neurovolatilome in Post-COVID-19 patients—CUP B53D23018450006—Grant Assignment Decree No. 1110 adopted on 20 July 2023 by the Italian Ministry of Ministry of University and Research (MUR). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
Open Exploration maintains a neutral stance on jurisdictional claims in published institutional affiliations and maps. All opinions expressed in this article are the personal views of the author(s) and do not represent the stance of the editorial team or the publisher.
References
Lippi G, Sanchis-Gomar F, Henry BM. COVID-19: unravelling the clinical progression of nature’s virtually perfect biological weapon.Ann Transl Med. 2020;8:693. [DOI] [PubMed] [PMC]
Alenazy MF, Aljohar HI, Alruwaili AR, Daghestani MH, Alonazi MA, Labban RS, et al. Gut Microbiota Dynamics in Relation to Long-COVID-19 Syndrome: Role of Probiotics to Combat Psychiatric Complications.Metabolites. 2022;12:912. [DOI] [PubMed] [PMC]
Álvarez-Santacruz C, Tyrkalska SD, Candel S. The Microbiota in Long COVID.Int J Mol Sci. 2024;25:1330. [DOI] [PubMed] [PMC]
Gang J, Wang H, Xue X, Zhang S. Microbiota and COVID-19: Long-term and complex influencing factors.Front Microbiol. 2022;13:963488. [DOI] [PubMed] [PMC]
Li J, Wang J, Yang Y, Cai P, Cao J, Cai X, et al. Etiology and antimicrobial resistance of secondary bacterial infections in patients hospitalized with COVID-19 in Wuhan, China: a retrospective analysis.Antimicrob Resist Infect Control. 2020;9:153. [DOI] [PubMed] [PMC]
Zhang H, Penninger JM, Li Y, Zhong N, Slutsky AS. Angiotensin-converting enzyme 2 (ACE2) as a SARS-CoV-2 receptor: molecular mechanisms and potential therapeutic target.Intensive Care Med. 2020;46:586–90. [DOI] [PubMed] [PMC]
Penninger JM, Grant MB, Sung JJY. The Role of Angiotensin Converting Enzyme 2 in Modulating Gut Microbiota, Intestinal Inflammation, and Coronavirus Infection.Gastroenterology. 2021;160:39–46. [DOI] [PubMed] [PMC]
Ho-Yen DO. The Epidemiology of Post Viral Fatigue Syndrome.Scott Med J. 1988;33:368–9. [DOI] [PubMed]
Lippi G, Sanchis-Gomar F, Henry BM. COVID-19 and its long-term sequelae: what do we know in 2023?Pol Arch Intern Med. 2023;133:16402. [DOI] [PubMed]
Barbato C, Di Certo MG, Gabanella F, Petrella C, Fiore M, Passananti C, et al. Staying tuned for post-COVID-19 syndrome: looking for new research to sniff out.Eur Rev Med Pharmacol Sci. 2021;25:5318–21. [DOI] [PubMed]
Mao L, Jin H, Wang M, Hu Y, Chen S, He Q, et al. Neurologic Manifestations of Hospitalized Patients With Coronavirus Disease 2019 in Wuhan, China.JAMA Neurol. 2020;77:683–90. [DOI] [PubMed] [PMC]
Faria NR, Mellan TA, Whittaker C, Claro IM, Candido DDS, Mishra S, et al. Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil.Science. 2021;372:815–21. [DOI] [PubMed] [PMC]
Azeem M, Cancemi P, Mukhtar F, Marino S, Peri E, Di Prima G, et al. Efficacy and limitations of SARS-CoV-2 vaccines—A systematic review.Life Sci. 2025;371:123610. [DOI] [PubMed]
Plante JA, Liu Y, Liu J, Xia H, Johnson BA, Lokugamage KG, et al. Spike mutation D614G alters SARS-CoV-2 fitness.Nature. 2021;592:116–21. [DOI] [PubMed] [PMC]
Zou J, Xie X, Fontes-Garfias CR, Swanson KA, Kanevsky I, Tompkins K, et al. The effect of SARS-CoV-2 D614G mutation on BNT162b2 vaccine-elicited neutralization.NPJ Vaccines. 2021;6:44. [DOI] [PubMed] [PMC]
Korber B, Fischer WM, Gnanakaran S, Yoon H, Theiler J, Abfalterer W, et al.; Sheffield COVID-19 Genomics Group; McDanal C, Perez LG, Tang H, Moon-Walker A, Whelan SP, LaBranche CC, et al. Tracking Changes in SARS-CoV-2 Spike: Evidence that D614G Increases Infectivity of the COVID-19 Virus.Cell. 2020;182:812–27.e19. [DOI] [PubMed] [PMC]
Ozono S, Zhang Y, Ode H, Sano K, Tan TS, Imai K, et al. SARS-CoV-2 D614G spike mutation increases entry efficiency with enhanced ACE2-binding affinity.Nat Commun. 2021;12:848. [DOI] [PubMed] [PMC]
Khatri R, Siddqui G, Sadhu S, Maithil V, Vishwakarma P, Lohiya B, et al. Intrinsic D614G and P681R/H mutations in SARS-CoV-2 VoCs Alpha, Delta, Omicron and viruses with D614G plus key signature mutations in spike protein alters fusogenicity and infectivity.Med Microbiol Immunol. 2023;212:103–22. [DOI] [PubMed] [PMC]
Planas D, Bruel T, Grzelak L, Guivel-Benhassine F, Staropoli I, Porrot F, et al. Sensitivity of infectious SARS-CoV-2 B.1.1.7 and B.1.351 variants to neutralizing antibodies.Nat Med. 2021;27:917–24. [DOI] [PubMed]
Shen X, Tang H, McDanal C, Wagh K, Fischer W, Theiler J, et al. SARS-CoV-2 variant B.1.1.7 is susceptible to neutralizing antibodies elicited by ancestral spike vaccines.Cell Host Microbe. 2021;29:529–39.e3. [DOI] [PubMed] [PMC]
Supasa P, Zhou D, Dejnirattisai W, Liu C, Mentzer AJ, Ginn HM, et al. Reduced neutralization of SARS-CoV-2 B.1.1.7 variant by convalescent and vaccine sera.Cell. 2021;184:2201–11.e7. [DOI] [PubMed] [PMC]
Zhou H, Dcosta BM, Samanovic MI, Mulligan MJ, Landau NR, Tada T. B.1.526 SARS-CoV-2 Variants Identified in New York City are Neutralized by Vaccine-Elicited and Therapeutic Monoclonal Antibodies.mBio. 2021;12:e0138621. [DOI] [PubMed] [PMC]
Kuzmina A, Khalaila Y, Voloshin O, Keren-Naus A, Boehm-Cohen L, Raviv Y, et al. SARS-CoV-2 spike variants exhibit differential infectivity and neutralization resistance to convalescent or post-vaccination sera.Cell Host Microbe. 2021;29:522–8.e2. [DOI] [PubMed] [PMC]
Forchette L, Sebastian W, Liu T. A Comprehensive Review of COVID-19 Virology, Vaccines, Variants, and Therapeutics.Curr Med Sci. 2021;41:1037–51. [DOI] [PubMed] [PMC]
Cherian S, Potdar V, Jadhav S, Yadav P, Gupta N, Das M, et al. SARS-CoV-2 Spike Mutations, L452R, T478K, E484Q and P681R, in the Second Wave of COVID-19 in Maharashtra, India.Microorganisms. 2021;9:1542. [DOI] [PubMed] [PMC]
Deng X, Garcia-Knight MA, Khalid MM, Servellita V, Wang C, Morris MK, et al. Transmission, infectivity, and neutralization of a spike L452R SARS-CoV-2 variant.Cell. 2021;184:3426–37.e8. [DOI] [PubMed] [PMC]
Rodriguez-Sevilla JJ, Güerri-Fernádez R, Recasens BB. Is There Less Alteration of Smell Sensation in Patients With Omicron SARS-CoV-2 Variant Infection?Front Med (Lausanne). 2022;9:852998. [DOI] [PubMed] [PMC]
Scholkmann F, May C. COVID-19, post-acute COVID-19 syndrome (PACS, “long COVID”) and post-COVID-19 vaccination syndrome (PCVS, “post-COVIDvac-syndrome”): Similarities and differences.Pathol Res Pract. 2023;246:154497. [DOI] [PubMed] [PMC]
Brann DH, Tsukahara T, Weinreb C, Lipovsek M, Van den Berge K, Gong B, et al. Non-neuronal expression of SARS-CoV-2 entry genes in the olfactory system suggests mechanisms underlying COVID-19-associated anosmia.Sci Adv. 2020;6:eabc5801. [DOI] [PubMed] [PMC]
Zingaropoli MA, Pasculli P, Barbato C, Petrella C, Fiore M, Dominelli F, et al. Biomarkers of Neurological Damage: From Acute Stage to Post-Acute Sequelae of COVID-19.Cells. 2023;12:2270. [DOI] [PubMed] [PMC]
Stilund M, Reuschlein AK, Christensen T, Møller HJ, Rasmussen PV, Petersen T. Soluble CD163 as a Marker of Macrophage Activity in Newly Diagnosed Patients with Multiple Sclerosis.PLoS One. 2014;9:e98588. [DOI] [PubMed] [PMC]
Burdo TH, Lentz MR, Autissier P, Krishnan A, Halpern E, Letendre S, et al. Soluble CD163 Made by Monocyte/Macrophages Is a Novel Marker of HIV Activity in Early and Chronic Infection Prior to and After Anti-retroviral Therapy.J Infect Dis. 2011;204:154–63. [DOI] [PubMed] [PMC]
Nissen SK, Ferreira SA, Nielsen MC, Schulte C, Shrivastava K, Hennig D, et al. Soluble CD163 Changes Indicate Monocyte Association With Cognitive Deficits in Parkinson’s Disease.Mov Disord. 2021;36:963–76. [DOI] [PubMed] [PMC]
Notarte KI, Catahay JA, Velasco JV, Pastrana A, Ver AT, Pangilinan FC, et al. Impact of COVID-19 vaccination on the risk of developing long-COVID and on existing long-COVID symptoms: A systematic review.EClinicalMedicine. 2022;53:101624. [DOI] [PubMed] [PMC]
Kim HJ, Kim MH, Choi MG, Chun EM. Psychiatric adverse events following COVID-19 vaccination: a population-based cohort study in Seoul, South Korea.Mol Psychiatry. 2024;29:3635–43. [DOI] [PubMed] [PMC]
Lai YJ, Liu SH, Manachevakul S, Lee TA, Kuo CT, Bello D. Biomarkers in long COVID-19: A systematic review.Front Med (Lausanne). 2023;10:1085988. [DOI] [PubMed] [PMC]
Shariff S, Uwishema O, Mizero J, Devi Thambi V, Nazir A, Mahmoud A, et al. Long-term cognitive dysfunction after the COVID-19 pandemic: a narrative review.Ann Med Surg (Lond). 2023;85:5504–10. [DOI] [PubMed] [PMC]
Riccardi G, Niccolini GF, Bellizzi MG, Fiore M, Minni A, Barbato C. Post-COVID-19 Anosmia and Therapies: Stay Tuned for New Drugs to Sniff Out.Diseases. 2023;11:79. [DOI] [PubMed] [PMC]