From:  Study of the relationship between transposable elements and microRNAs in the development of glioblastoma for its targeted therapy

 Transposable element-derived microRNAs whose expression is reduced in GB development.

No.MicroRNA, change in expressionTE-source [11]Where microRNA was determinedMechanism of influence on GB/target genes (miRDB)
1miR-95, ↓ [54–56]LINE2GB samples [56], GB cell lines [55]Suppression of epithelial–mesenchymal transition [55]
2miR-151a-3p (miR-151a), ↓ [57]LINE2GB cell lines [57]Increases the sensitivity of cells to TMZ [57]
3miR-224-3p, ↓ [58]DNA/MER135GB cell lines [58]Inhibits ATG5 expression, increases cell sensitivity to TMZ [58]
4miR-224-5p, ↓ [59]DNA/MER135GB samples [59]CXCR4 inhibition [59]
5miR-342-3p, ↓ [60]SINE/tRNA-RTEGB cell lines [60]Zic4 inhibition [60]
6miR-345-5p, ↓ [61]SINE/MIRBlood plasma exosomes [61]EPN3, CTTNBP2NL, YEATS2, RFC1, RAB27B, ZNF133, RPA1, KMT5B
7miR-361-3p, ↓ [62]DNA/hAT-CharlieGB samples, GB cell lines [62]BCL2 inhibition [62]
8miR-361-5p, ↓ [63]DNA/hAT-CharlieGB cell lines [63]ACTG1 inhibition [63]
9miR-374a, ↓ [64]LINE1GB cell lines [64]Stimulation of GB cells apoptosis [64]
10miR-378a-3p, ↓ [65]SINE/MIRGB cell lines [65]TSPAN17 inhibition [65]
11miR-422a, ↓ [66]SINE/MIRGB samples [66]PIK3CA inhibition [66]
12miR-513, ↓ [67]DNA/hAT-Tip100GB samples [67]IGF2BP1 inhibition [67]
13miR-548x-3p (miR-548x), ↓ [68]DNA/TcMar-MarinerGB cell lines [68]mTOR, RHEB, PDK1, PI3K/AKT inhibition [68]
14miR-562, ↓ [69]LINE1GB samples [69]c-MET/AKT signaling pathway inhibition [69]
15miR-576-3p, ↓ [70]LINE1GB cell lines [70]HIF-1α inhibition [70]
16miR-579, ↓ [71]DNA/TcMar-MarinerGB cell lines [71]PDK1, Rheb, AKT1 inhibition [71]
17miR-584-5p, ↓ [72]DNA/hAT-BlackjackGB samples, GB cell lines [72]KPNB1 inhibition [72]
18miR-587, ↓ [73]DNA/hAT-Tip100GB samples [73]PDIA3 inhibition [73]
19miR-588, ↓ [74]LINE1GB cell lines [74]ROBO1 inhibition [74]
20miR-612, ↓ [75]SINE/MIRGB samples [75]AKT2 inhibition [75]
21miR-619, ↓ [76]SINE/AluGB samples [76]MDGA2, WBP1L, MAPK9, OGT, PTPRA, ACVR2B
22miR-625-5p (miR-625), ↓ [77]LINE1GB samples [77]AKT2 inhibition [77]
23miR-634, ↓ [78]LINE1GB cell lines [78]CYR61 inhibition [78]
24miR-646, ↓ [79]LTR/ERVLGB samples [79]р62/Keap1/Nrf2 signaling and HO-1 inhibition [79]
25miR-652-5p, ↓ [80]DNA/hAT-Tip100GB samples, GB cell lines [80]SDC1/TGFβ2/pERBB4 signaling inhibition [80]
26miR-708-3p, ↓ [54]LINE2GB samples [54]SCAMP1, JARID2, TRAF3, VIM, BAZ1B, SPRED1, HSPA4L
27miR-708-5p (miR-708), ↓ [81, 54]LINE2GB cell lines [81], GB samples [54]Akt1, Bcl2, CCND1, EZH2, MMP2, PARP-1 genes inhibition [81]
28miR-885-3p, ↓ [82]SINE/MIRGB samples, GB cell lines [82]RGS8, GPCPD1, RAVER2, SOCS6, SPATS2L, RARG, ARMH3, NAT8L, IGF1R
29miR-1249-3p, ↓ [54]LINE2GB samples [54]GRB14, RGN, TBPL2, SPATA17, CCDC141, ADGRG2
30miR-1268a, ↓ [83]SINE/AluGB samples [83]ABCC1 inhibition, increased sensitivity of GB to TMZ [83]
31miR-1268b, ↓ [84]SINE/AluGB samples [84]STXBP1, EEPD1, EGR4, CMIP, FCAR, HPD, USB1
32miR-1271, ↓ [85]LINE2GB samples [85]CaMKII inhibition [85]
33miR-1294, ↓ [86]SINE/MIRGB samples [86]Inhibition of MYC and Wnt/β-catenin signaling [86]
34miR-1303, ↓ [87]SINE/AluGB samples [87]HOXA10 gene inhibition [87]
35miR-1321, ↓ [88]SINE/MIRGB cell lines [88]SERPINA1 inhibition [88]
36miR-1825, ↓ [89]LINE2GB cell lines [89]Wnt/β-catenin inhibition [89]
37miR-3174, ↓ [90]DNA/hAT-CharlieGB samples, GB cell lines [90]CDK6, PLAU, RHOA, MDM2, CD44 inhibition [90]
38miR-3201, ↓ [91]LINE2GB samples [91]TENM1, SLITRK1, GCH1, NT5E, TMEM265, EPM2A
39miR-3664 (miR-3664-5p), ↓ [84]DNA/TcMar-Tigger GB samples [84]RIPOR1, ITK, MTDH, CAMTA2, TJP3, CCSER1, PTPRJ, LIX1
40miR-3681, ↓ [92]LTR/ERVLGB samples [92]MALT1 inhibition [92]
41miR-4286, ↓ [93]LTR/ERVL-MaLRGB samples [93]Regulates relationship between TGF-β and IGF-1 [93]
42miR-4496, ↓ [94]SINE/MIRGB cell lines [94]Suppresses epithelial–mesenchymal transition [94]
43miR-7973, ↓ [95]SINE/MIRGB cell lines [95]ZC3H12B, NATD1, ZFYVE26, PXDN, IRAK4, RASL10A, GLE1

↓: decrease in expression; TE: transposable element; GB: glioblastoma; TMZ: temozolomide; mTOR: mammalian target of rapamycin; HIF-1α: hypoxia-inducible factor-1α; CaMKII: calmodulin-dependent protein kinase II; TGF: transforming growth factor; SINE: short interspersed nuclear element; tRNA: transfer RNA; c-MET: cellular-mesenchymal-epithelial transition; HO-1: heme oxygenase-1; ERVL: endogenous retrovirus L; MaLR: mammalian apparent LTR-retrotransposon; RTE: retrotransposon encoded; MIR: mammalian-wide interspersed repeat; TSPAN17: tetraspanin 17.