From:  FGFR3 gene alteration and protein expression in upper urinary tract carcinoma: unsuitability of ureteroscopic biopsy specimens for FGFR3 RNA testing

 Characteristics of 36 patients with upper urinary tract carcinoma undergoing diagnostic URS biopsy and RNU.

VariablesCategoryTotalFGFR3 RNA test of RNU specimen
Test failureNo alterationAlterationP value #
No. of patientsTotal36 (100%)3 (8.3%)25 (69%)8 (22%)-
Treatment period (archival sample age)2018–2020 (5–7 years)15 (42%)3 (100%)10 (40%)2 (25%)0.20 †
2021–2022 (3–4 years)7 (19%)05 (20%)2 (25%)
2023–2025 (2 years or less)14 (39%)010 (40%)4 (50%)
SexMale25 (69%)2 (67%)16 (64%)7 (88%)0.38 †
Female11 (31%)1 (33%)9 (36%)1 (13%)
Age at RNU(mean ± SD)73 ± 7.171 ± 9.874 ± 4.769 ± 8.50.15 ‡
Tumor grade in URS biopsy specimenLow-grade9 (25%)3 (100%)4 (16%)2 (25%)0.60 †
High-grade24 (67%)019 (76%)5 (63%)
Undefined3 (8.3%)02 (8.0%)1 (13%)
H-score of FGFR3 in URS biopsy specimenMean ± SD48 ± 671.7 ± 2.821 ± 24150 ± 70< 0.0001 ‡
Median, IQR25 (0–58)0 (0–5)15 (0–40)150 (85–203)
Tumor grade in RNU specimenLow-grade6 (17%)03 (12%)3 (38%)0.14 †
High-grade30 (83%)3 (100%)22 (88%)5 (63%)
CIS in RNU specimenNo29 (81%)3 (100%)18 (72%)8 (100%)0.15 †
Yes7 (19%)07 (28%)0
Pathological T (pT) category ##pTa6 (17%)03 (12%)3 (38%)0.17 †
pTis1 (2.8%)01 (4.0%)0
pT13 (8.3%)1 (33%)1 (4.0%)1 (13%)
pT27 (19%)1 (33%)4 (16%)2 (25%)
pT315 (42%)013 (52%)2 (25%)
pT44 (11%)1 (33%)3 (12%)0
H-score of FGFR3 in RNU specimenMean ± SD112 ± 88107 ± 10078 ± 64218 ± 740.0078 ‡
Median (IQR)100 (33–178)100 (10–210)60 (20–140)225 (150–293)

CIS: carcinoma in situ; FGFR3: fibroblast growth factor receptor 3; H-score: histochemical scoring method; IQR, interquartile range; RNU: radical nephroureterectomy; SD, standard deviation; URS: ureteroscopic. #: Compared between no FGFR3 alteration and FGFR3 alteration according to FGFR3 RNA test; ##: non muscle-invasive disease (Ta/is/1) vs muscle-invasive disease (T2-4); †: the Fisher's exact test; ‡: Mann–Whitney U test; Totals may not add up to 100% due to rounding.