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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" article-type="review-article">
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Explor Target Antitumor Ther</journal-id>
<journal-id journal-id-type="publisher-id">ETAT</journal-id>
<journal-title-group>
<journal-title>Exploration of Targeted Anti-tumor Therapy</journal-title>
</journal-title-group>
<issn pub-type="epub">2692-3114</issn>
<publisher>
<publisher-name>Open Exploration Publishing</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="doi">10.37349/etat.2024.00221</article-id>
<article-id pub-id-type="manuscript">1002221</article-id>
<article-categories>
<subj-group>
<subject>Perspective</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Artificial intelligence and classification of mature lymphoid neoplasms</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-6129-8299</contrib-id>
<name>
<surname>Carreras</surname>
<given-names>Joaquim</given-names>
</name>
<role content-type="https://credit.niso.org/contributor-roles/conceptualization/">Conceptualization</role>
<role content-type="https://credit.niso.org/contributor-roles/investigation/">Investigation</role>
<role content-type="https://credit.niso.org/contributor-roles/writing-original-draft/">Writing—original draft</role>
<role content-type="https://credit.niso.org/contributor-roles/writing-review-editing/">Writing—review &amp; editing</role>
<xref ref-type="aff" rid="I1">
<sup>1</sup>
</xref>
<xref ref-type="corresp" rid="cor1">
<sup>*</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid">https://orcid.org/0000-0002-1402-0868</contrib-id>
<name>
<surname>Hamoudi</surname>
<given-names>Rifat</given-names>
</name>
<role content-type="https://credit.niso.org/contributor-roles/investigation/">Investigation</role>
<xref ref-type="aff" rid="I2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="I3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<contrib-id contrib-id-type="orcid">https://orcid.org/0000-0003-4332-5254</contrib-id>
<name>
<surname>Nakamura</surname>
<given-names>Naoya</given-names>
</name>
<role content-type="https://credit.niso.org/contributor-roles/investigation/">Investigation</role>
<role content-type="https://credit.niso.org/contributor-roles/supervision/">Supervision</role>
<xref ref-type="aff" rid="I1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="editor">
<name>
<surname>Nardone</surname>
<given-names>Valerio</given-names>
</name>
<role>Academic Editor</role>
<aff>University of Campania “L. Vanvitelli”, Italy</aff>
</contrib>
</contrib-group>
<aff id="I1">
<sup>1</sup>Department of Pathology, Tokai University School of Medicine, Isehara 259-1193, Japan</aff>
<aff id="I2">
<sup>2</sup>Department of Clinical Sciences, College of Medicine, University of Sharjah, Sharjah P.O. Box 27272, United Arab Emirates</aff>
<aff id="I3">
<sup>3</sup>Division of Surgery and Interventional Science, University College London, WC1E 6BT London, UK</aff>
<author-notes>
<corresp id="cor1">
<bold>
<sup>*</sup>Correspondence:</bold> Joaquim Carreras, Department of Pathology, Tokai University School of Medicine, 143 Shimokasuya, Isehara 259-1193, Japan. <email>joaquim.carreras@tokai.ac.jp</email></corresp>
</author-notes>
<pub-date pub-type="ppub">
<year>2024</year>
</pub-date>
<pub-date pub-type="epub">
<day>23</day>
<month>04</month>
<year>2024</year>
</pub-date>
<volume>5</volume>
<issue>2</issue>
<fpage>332</fpage>
<lpage>348</lpage>
<history>
<date date-type="received">
<day>02</day>
<month>02</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>07</day>
<month>09</month>
<year>2023</year>
</date>
</history>
<permissions>
<copyright-statement>© The Author(s) 2024.</copyright-statement>
<license xlink:href="https://creativecommons.org/licenses/by/4.0/">
<license-p>This is an Open Access article licensed under a Creative Commons Attribution 4.0 International License (<ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link>), which permits unrestricted use, sharing, adaptation, distribution and reproduction in any medium or format, for any purpose, even commercially, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.</license-p>
</license>
</permissions>
<abstract>
<p>Hematologists, geneticists, and clinicians came to a multidisciplinary agreement on the classification of lymphoid neoplasms that combines clinical features, histological characteristics, immunophenotype, and molecular pathology analyses. The current classification includes the World Health Organization (WHO) Classification of tumours of haematopoietic and lymphoid tissues revised 4th edition, the International Consensus Classification (ICC) of mature lymphoid neoplasms (report from the Clinical Advisory Committee 2022), and the 5th edition of the proposed WHO Classification of haematolymphoid tumours (lymphoid neoplasms, WHO-HAEM5). This article revises the recent advances in the classification of mature lymphoid neoplasms. Artificial intelligence (AI) has advanced rapidly recently, and its role in medicine is becoming more important as AI integrates computer science and datasets to make predictions or classifications based on complex input data. Summarizing previous research, it is described how several machine learning and neural networks can predict the prognosis of the patients, and classified mature B-cell neoplasms. In addition, new analysis predicted lymphoma subtypes using cell-of-origin markers that hematopathologists use in the clinical routine, including <italic>CD3, CD5</italic>, <italic>CD19</italic>, <italic>CD79A</italic>, <italic>MS4A1</italic> (<italic>CD20</italic>), <italic>MME</italic> (<italic>CD10</italic>), <italic>BCL6</italic>, <italic>IRF4</italic> (<italic>MUM-1</italic>), <italic>BCL2</italic>, <italic>SOX11</italic>, <italic>MNDA</italic>, and <italic>FCRL4</italic> (<italic>IRTA1</italic>). In conclusion, although most categories are similar in both classifications, there are also conceptual differences and differences in the diagnostic criteria for some diseases. It is expected that AI will be incorporated into the lymphoma classification as another bioinformatics tool.</p>
</abstract>
<kwd-group>
<kwd>Artificial intelligence</kwd>
<kwd>machine learning</kwd>
<kwd>deep learning</kwd>
<kwd>artificial neural networks</kwd>
<kwd>non-Hodgkin lymphomas</kwd>
<kwd>pan-cancer series</kwd>
<kwd>prognosis</kwd>
<kwd>gene expression</kwd>
</kwd-group>
<funding-group>
<award-group id="award001">
<funding-source>
<institution-wrap>
<institution>Ministry of Education, Culture, Sports, Science and Technology (MEXT)</institution>
</institution-wrap>
</funding-source>
</award-group>
<award-group id="award002">
<funding-source>
<institution-wrap>
<institution>the Japan Society for the Promotion of Science (JSPS)</institution>
</institution-wrap>
</funding-source>
<award-id>KAKEN 23K06454</award-id>
<award-id>15K19061</award-id>
<award-id>18K15100</award-id>
<award-id>24590430</award-id>
</award-group>
<award-group id="award003">
<funding-source>
<institution-wrap>
<institution>Tokai University School of Medicine research incentive assistant plan &lt;/bold&gt;[2021-B04]. This syudy was funded by the &lt;bold&gt;Cancer Research UK</institution>
</institution-wrap>
</funding-source>
<award-id>2021-B04]. This syudy was funded by the &lt;bold&gt;Cancer Research UK&lt;/bold&gt; [47550</award-id>
</award-group>
<award-group id="award004">
<funding-source>
<institution-wrap>
<institution>UFS project PKAG/309&lt;/bold&gt; [C92/A8329]. Rifat Hamoudi is funded by ASPIRE, the technology program management pillar of Abu Dhabi’s Advanced Technology Research Council (ATRC), via the &lt;bold&gt;ASPIRE Precision Medicine Research Institute Abu Dhabi (ASPIREPMRIAD)</institution>
</institution-wrap>
</funding-source>
<award-id>C92/A8329]. Rifat Hamoudi is funded by ASPIRE</award-id>
<award-id>the technology program management pillar of Abu Dhabi’s Advanced Technology Research Council (ATRC)</award-id>
<award-id>via the &lt;bold&gt;ASPIRE Precision Medicine Research Institute Abu Dhabi (ASPIREPMRIAD) &lt;/bold&gt;[VRI-20-10</award-id>
</award-group>
</funding-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p id="p-1">This manuscript provides a brief communication of the current status of the classification of mature lymphoid neoplasm and aims to relate it to the development of prediction and classification tools using artificial intelligence (AI). First, a summary of the current lymphoma classification is made. The current classification is the revised 4th edition of the World Health Organization (WHO) classification of tumours of hematopoietic and lymphoid tissues. This classification has recently been updated and evolved into the International Consensus Classification (ICC) and the proposed 5th edition of the WHO Classification of haematolymphoid tumours (WHO-HAEM5). A comparison between both classifications on mature lymphoid neoplasms is made. Secondly, the applications of AI in the assessment of the prognosis and classification of mature lymphoid neoplasms are shown. This section summarizes part of previous research in this field. Finally, we propose a simple method based on a neural network to classify mature B-cell neoplasms using conventional cell-of-origin markers.</p>
</sec>
<sec id="s2">
<title>Classification of mature lymphoid neoplasms</title>
<sec id="t2-1">
<title>Evolution of lymphoma classification</title>
<p id="p-2">There have been several lymphoma classifications, including the Rappaport Classification, the Rye Classification for Hodgkin Disease, the Kiel Classification for Lymphoma, the Working Formulation for Non-Hodgkin Lymphoma (HL), the Revised European American Lymphoma Classification (REAL), and the WHO Classification.</p>
<p id="p-3">The current lymphoma classification goes back to 1994 when the revised Europe an American classification of lymphoid neoplasms (REAL) was released [<xref ref-type="bibr" rid="B1">1</xref>]. This classification was revised in 1997, and the approach was improved by including morphological features, immunophenotype, clinical characteristics, and molecular pathology methods in addition to histological assessment [<xref ref-type="bibr" rid="B2">2</xref>]. The classification changed under the WHO umbrella in 2001, 2008, and 2016 [<xref ref-type="bibr" rid="B3">3</xref>–<xref ref-type="bibr" rid="B5">5</xref>].</p>
<p id="p-4">The current classification, known as the 2016 revision of the WHO Classification of lymphoid neoplasms, was developed by hematopathologists, geneticists, and physicians by agreement. It contains both updated and preliminary entities for various hematological neoplasia [<xref ref-type="bibr" rid="B5">5</xref>]. This classification is currently scheduled to be changed in 2022–2023. In the summer of 2022, the Clinical Advisory Committee reported the ICC of mature lymphoid neoplasms [<xref ref-type="bibr" rid="B6">6</xref>], which was followed by the ICC of myeloid neoplasms and acute leukemias [<xref ref-type="bibr" rid="B7">7</xref>], commentary of precision medicine [<xref ref-type="bibr" rid="B8">8</xref>], and genomic profiling for clinical decision making in lymphoid neoplasms [<xref ref-type="bibr" rid="B9">9</xref>]. Almost concomitantly, an overview of the upcoming WHO-HAEM5 focusing on lymphoid, myeloid, and histiocytic/dendritic neoplasms was published as well [<xref ref-type="bibr" rid="B10">10</xref>–<xref ref-type="bibr" rid="B12">12</xref>]. Because the 5th edition of the WHO Classification is based on the previous version, both the ICC and the 5th WHO are very similar.</p>
</sec>
<sec id="t2-2">
<title>Relevant subtypes of mature B-cell neoplasms</title>
<p id="p-5">The mature lymphoid and histiocytic/dendritic cell neoplasms are classified into different groups: mature B-cell neoplasms, classic HL, mature T-cell and natural killer (NK)-cell neoplasms, immunodeficiency-associated lymphoproliferative disorders, and histiocytic and dendritic cell neoplasms [<xref ref-type="bibr" rid="B6">6</xref>].</p>
<p id="p-6">The most “relevant subtypes” of mature B-cell neoplasms, which are well known by general pathologists, are the following: chronic lymphocytic leukemia (CLL)/small lymphocytic lymphoma (SLL), splenic marginal zone lymphoma (MZL), hairy cell leukemia, lymphoplasmacytic lymphoma (LPL) and Waldenstrom macroglobulinemia, multiple myeloma, extranodal MZL of mucosa-associated lymphoid tissue (MALT) lymphoma, nodal MZL, follicular lymphoma (FL), mantle cell lymphoma (MCL), diffuse large B-cell lymphoma (DLBCL), plasmablastic lymphoma, human herpesvirus 8 (HHV-8)-positive DLBCL not otherwise specified (NOS), primary effusion lymphoma, Burkitt lymphoma (BL), high-grade B-cell lymphoma (HBCL), and primary mediastinal large B-cell lymphoma (LBCL), among others [<xref ref-type="bibr" rid="B6">6</xref>].</p>
<p id="p-7">These “relevant” entities are present both in the 2022 ICC and WHO-HAEM5 [<xref ref-type="bibr" rid="B10">10</xref>]. A comparison between the ICC of mature lymphoid neoplasms [<xref ref-type="bibr" rid="B6">6</xref>], the WHO-HAEM5 [<xref ref-type="bibr" rid="B10">10</xref>], and the WHO Classification, revised 4th edition [<xref ref-type="bibr" rid="B5">5</xref>], with a focus on the mature B-cell neoplasms is shown in <xref ref-type="table" rid="t1">Table 1</xref>. Overall, the classifications are comparable as they derived from the same original source, the revised 4th edition. However, although most categories are similar in both classifications, there are also conceptual differences and differences in the diagnostic criteria for some diseases. In the ICC, the changes from the 2016 WHO Classification are highlighted with an asterisk.</p>
<table-wrap id="t1">
<label>Table 1</label>
<caption>
<p>Comparison between ICC 2022, WHO-HAEM5, and WHO revised 4th edition</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th>
<bold>The ICC of Mature Lymphoid Neoplasms: a report from the Clinical Advisory Committee (2022)</bold>
</th>
<th>
<bold>WHO Classification, 5th edition (2022), mature B-cell neoplasms</bold>
</th>
<th>
<bold>WHO Classification, revised 4th edition</bold>
</th>
</tr>
</thead>
<tbody>
<tr>
<td>
<bold>-</bold>
</td>
<td>
<bold>Pre-neoplastic and neoplastic small lymphocytic proliferations</bold>
</td>
<td>
<bold>-</bold>
</td>
</tr>
<tr>
<td>Monoclonal B-cell lymphocytosis (CLL type/non-CLL type)</td>
<td>Monoclonal B-cell lymphocytosis</td>
<td>Monoclonal B-cell lymphocytosis</td>
</tr>
<tr>
<td>CLL/SLL</td>
<td>CLL/SLL</td>
<td>CLL/SLL</td>
</tr>
<tr>
<td>B-cell prolymphocytic leukemia</td>
<td>Entity deleted</td>
<td>B-cell prolymphocytic leukemia</td>
</tr>
<tr>
<td>
<bold>Splenic B-cell lymphomas (BCLs) and leukemias</bold>
</td>
<td>
<bold>Splenic BCLs and leukemias</bold>
</td>
<td>
<bold>-</bold>
</td>
</tr>
<tr>
<td>Hairy cell leukemia</td>
<td>Hairy cell leukemia</td>
<td>Hairy cell leukemia</td>
</tr>
<tr>
<td>Splenic MZL</td>
<td>Splenic MZL</td>
<td>Splenic MZL</td>
</tr>
<tr>
<td>Splenic diffuse red pulp small BCL</td>
<td>Splenic diffuse red pulp small BCL</td>
<td>Splenic diffuse red pulp small BCL</td>
</tr>
<tr>
<td>Hairy cell leukemia-variant</td>
<td>Splenic BCL/leukemia with prominent nucleoli</td>
<td>Not previously included (encompassing hairy cell leukemia variant and some cases of B-cell prolymphocytic leukemia)</td>
</tr>
<tr>
<td>
<bold>LPL</bold>
</td>
<td>
<bold>LPL</bold>
</td>
<td>
<bold>LPL</bold>
</td>
</tr>
<tr>
<td>LPL/Waldenstrom macroglobulinemia</td>
<td>LPL</td>
<td>LPL</td>
</tr>
<tr>
<td>
<bold>MZL</bold>
</td>
<td>
<bold>MZL</bold>
</td>
<td>
<bold>MZL</bold>
</td>
</tr>
<tr>
<td>Extranodal MZL of MALT (MALT lymphoma)</td>
<td>Extranodal MZL of MALT</td>
<td>Extranodal MZL of MALT</td>
</tr>
<tr>
<td>Primary cutaneous marginal zone lymphoproliferative disorder*</td>
<td>Primary cutaneous MZL</td>
<td>Not previously included (originally included under extranodal MZL of MALT)</td>
</tr>
<tr>
<td>Nodal MZL</td>
<td>Nodal MZL</td>
<td>Nodal MZL</td>
</tr>
<tr>
<td>Pediatric nodal MZL</td>
<td>Pediatric MZL</td>
<td>Pediatric MZL</td>
</tr>
<tr>
<td>
<bold>FL</bold>
</td>
<td>
<bold>FL</bold>
</td>
<td>
<bold>FL</bold>
</td>
</tr>
<tr>
<td>
<italic>In situ</italic> follicular neoplasia</td>
<td>
<italic>In situ</italic> follicular B-cell neoplasm</td>
<td>
<italic>In situ</italic> follicular neoplasia</td>
</tr>
<tr>
<td>FL</td>
<td>FL</td>
<td>FL</td>
</tr>
<tr>
<td>Pediatric-type FL</td>
<td>Pediatric-type FL</td>
<td>Pediatric-type FL</td>
</tr>
<tr>
<td>Duodenal-type FL</td>
<td>Duodenal-type FL</td>
<td>Duodenal-type FL</td>
</tr>
<tr>
<td>Testicular FL*</td>
<td>-</td>
<td>-</td>
</tr>
<tr>
<td>BCL2 apoptosis regulator (<italic>BCL2</italic>)-Rearrangement-negative, CD23-positive follicle center lymphoma</td>
<td>-</td>
<td>-</td>
</tr>
<tr>
<td>
<bold>Cutaneous follicle center lymphoma</bold>
</td>
<td>
<bold>Cutaneous follicle center lymphoma</bold>
</td>
<td>-</td>
</tr>
<tr>
<td>Primary cutaneous follicle center lymphoma</td>
<td>Primary cutaneous follicle center lymphoma</td>
<td>Primary cutaneous follicle center lymphoma</td>
</tr>
<tr>
<td>
<bold>MCL</bold>
</td>
<td>
<bold>MCL</bold>
</td>
<td>
<bold>MCL</bold>
</td>
</tr>
<tr>
<td>
<italic>In situ</italic> mantle cell neoplasia</td>
<td>
<italic>In situ</italic> mantle cell neoplasm</td>
<td>
<italic>In situ</italic> mantle cell neoplasia</td>
</tr>
<tr>
<td>MCL</td>
<td>MCL</td>
<td>MCL</td>
</tr>
<tr>
<td>Leukemic non-nodal MCL</td>
<td>Leukemic non-nodal MCL</td>
<td>Leukemic non-nodal MCL</td>
</tr>
<tr>
<td>-</td>
<td>
<bold>Transformations of indolent BCLs</bold>
</td>
<td>-</td>
</tr>
<tr>
<td>-</td>
<td>Transformations of indolent BCLs</td>
<td>Not previously included</td>
</tr>
<tr>
<td>
<bold>LBCLs</bold>
</td>
<td>
<bold>LBCLs</bold>
</td>
<td>
<bold>LBCLs</bold>
</td>
</tr>
<tr>
<td>DLBCL, NOS/germinal center B (GCB)-cell subtype/activated B-cell (ABC) subtype</td>
<td>DLBCL, NOS</td>
<td>DLBCL, NOS</td>
</tr>
<tr>
<td>T cell/histiocyte-rich LBCL</td>
<td>T-cell/histiocyte-rich LBCL</td>
<td>T-cell/histiocyte-rich LBCL</td>
</tr>
<tr>
<td>HBCL, with <italic>MYC</italic> and <italic>BCL2</italic> rearrangements*/HBCL with <italic>MYC</italic> and BCL6 transcription repressor (<italic>BCL6</italic>) rearrangements*</td>
<td>DLBCL/HBCL with <italic>MYC</italic> and <italic>BCL2</italic> rearrangements</td>
<td>HBCL with <italic>MYC</italic> and <italic>BCL2</italic> and/or <italic>BCL6</italic> rearrangements</td>
</tr>
<tr>
<td>Anaplastic lymphoma kinase (ALK)-positive LBCL</td>
<td>ALK-positive LBCL</td>
<td>ALK-positive LBCL</td>
</tr>
<tr>
<td>LBCL with interferon regulatory factor 4 (IRF4) rearrangement*</td>
<td>LBCL with IRF4 rearrangement</td>
<td>LBCL with IRF4 rearrangement</td>
</tr>
<tr>
<td>LBCL with 11q aberration*</td>
<td>HBCL with 11q aberrations</td>
<td>Burkitt-like lymphoma with 11q aberration</td>
</tr>
<tr>
<td>Nodular lymphocyte-predominant BCL</td>
<td>-</td>
<td>-</td>
</tr>
<tr>
<td>Lymphomatoid granulomatosis</td>
<td>Lymphomatoid granulomatosis</td>
<td>Lymphomatoid granulomatosis</td>
</tr>
<tr>
<td>Epstein-Barr virus–positive polymorphic B-cell lymphoproliferative disorder, NOS*</td>
<td>-</td>
<td>-</td>
</tr>
<tr>
<td>EBV-positive DLBCL, NOS</td>
<td>EBV-positive DLBCL</td>
<td>EBV-positive DLBCL, NOS</td>
</tr>
<tr>
<td>Pediatric nodal MZL</td>
<td>Pediatric MZL</td>
<td>Pediatric MZL</td>
</tr>
<tr>
<td>DLBCL associated with chronic inflammation</td>
<td>DLBCL associated with chronic inflammation</td>
<td>DLBCL associated with chronic inflammation</td>
</tr>
<tr>
<td>Fibrin-associated DLBCL</td>
<td>Fibrin-associated LBCL</td>
<td>Not previously included (previously considered a subtype of DLBCL associated with chronic inflammation)</td>
</tr>
<tr>
<td>HHV-8 and EBV-negative primary effusion-based lymphoma*</td>
<td>Fluid overload-associated LBCL</td>
<td>Not previously included</td>
</tr>
<tr>
<td>Plasmablastic lymphoma</td>
<td>Plasmablastic lymphoma</td>
<td>Plasmablastic lymphoma</td>
</tr>
<tr>
<td>Primary DLBCL of the central nervous system/primary DLBCL of the testis*</td>
<td>Primary LBCL of immune-privileged sites</td>
<td>Not previously included, encompassing primary DLBCL of the clinical nurse specialist (CNS) in revised 4th edition (plus primary LBCL of the vitreoretina and primary LBCL of the testis)</td>
</tr>
<tr>
<td>Primary cutaneous DLBCL, leg type</td>
<td>Primary cutaneous DLBCL, leg type</td>
<td>Primary cutaneous DLBCL, leg type</td>
</tr>
<tr>
<td>Intravascular LBCL</td>
<td>Intravascular LBCL</td>
<td>Intravascular LBCL</td>
</tr>
<tr>
<td>Primary mediastinal LBC</td>
<td>Primary mediastinal LBCL</td>
<td>Primary mediastinal LBCL</td>
</tr>
<tr>
<td>Mediastinal gray-zone lymphoma*</td>
<td>Mediastinal grey-zone lymphoma</td>
<td>BCL, unclassifiable, with features intermediate between DLBCL and classic HL</td>
</tr>
<tr>
<td>HBCL, NOS</td>
<td>HBCL, NOS</td>
<td>HBCL, NOS</td>
</tr>
<tr>
<td>Nodular lymphocyte predominant BCL*</td>
<td>-</td>
<td>-</td>
</tr>
<tr>
<td>
<bold>BL</bold>
</td>
<td>
<bold>BL</bold>
</td>
<td>-</td>
</tr>
<tr>
<td>BL</td>
<td>BL</td>
<td>BL</td>
</tr>
<tr>
<td>
<bold>HHV-8–associated lymphoproliferative disorders</bold>
</td>
<td>
<bold>Kaposi’s sarcoma-associated herpesvirus (KSHV)/HHV8-associated B-cell lymphoid proliferations and lymphomas</bold>
</td>
<td>-</td>
</tr>
<tr>
<td>Primary effusion lymphoma</td>
<td>Primary effusion lymphoma</td>
<td>Primary effusion lymphoma</td>
</tr>
<tr>
<td>HHV-8-positive DLBCL, NOS</td>
<td>KSHV/HHV8-positive DLBCL</td>
<td>HHV8-positive DLBCL, NOS</td>
</tr>
<tr>
<td>HHV-8-positive germinotropic lymphoproliferative disorder</td>
<td>KSHV/HHV8-positive germinotropic lymphoproliferative disorder</td>
<td>HHV8-positive germinotropic lymphoproliferative disorder</td>
</tr>
<tr>
<td>Pediatric nodal MZL</td>
<td>Pediatric MZL</td>
<td>Pediatric MZL</td>
</tr>
<tr>
<td>-</td>
<td>
<bold>Lymphoid proliferations and lymphomas associated with immune deficiency and dysregulation</bold>
</td>
<td>-</td>
</tr>
<tr>
<td>-</td>
<td>Hyperplasias arising in immune deficiency/dysregulation</td>
<td>Not previously included, encompassing non-destructive post-transplant lymphoproliferative disorders, among others</td>
</tr>
<tr>
<td>-</td>
<td>Polymorphic lymphoproliferative disorders arising in immune deficiency/dysregulation</td>
<td>Not previously included, encompassing polymorphic posttransplant lymphoproliferative disorders, other iatrogenic immunodeficiency-associated lymphoproliferative disorders, among others</td>
</tr>
<tr>
<td>EBV-positive mucocutaneous ulcer*</td>
<td>EBV-positive mucocutaneous ulcer</td>
<td>EBV-positive mucocutaneous ulcer</td>
</tr>
<tr>
<td>-</td>
<td>Lymphomas arising in immune deficiency/dysregulation</td>
<td>Not previously included, encompassing monomorphic posttransplant lymphoproliferative disorders, classic HL posttransplant lymphoproliferative disorders, lymphomas associated with human immunodeficiency virus (HIV) infection, among others</td>
</tr>
<tr>
<td>-</td>
<td>Inborn error of immunity-associated lymphoid proliferations and lymphomas</td>
<td>Lymphoproliferative diseases associated with primary immune disorders</td>
</tr>
<tr>
<td>-</td>
<td>
<bold>Plasma cell neoplasms and other diseases with paraproteins</bold>
</td>
<td>-</td>
</tr>
<tr>
<td>-</td>
<td>
<bold>Monoclonal gammopathies</bold>
</td>
<td>-</td>
</tr>
<tr>
<td>Primary cold agglutinin disease*</td>
<td>Cold agglutinin disease</td>
<td>Not previously included</td>
</tr>
<tr>
<td>Immunoglobulin M (IgM) monoclonal gammopathy of undetermined significance (MGUS)/IgM MGUS, plasma cell type*/IgM MGUS, NOS*</td>
<td>IgM MGUS</td>
<td>IgM MGUS</td>
</tr>
<tr>
<td>Non-IgM MGUS</td>
<td>Non-IgM MGUS</td>
<td>Non-IgM MGUS</td>
</tr>
<tr>
<td>-</td>
<td>Monoclonal gammopathy of renal significance</td>
<td>Not previously included</td>
</tr>
<tr>
<td>Monoclonal Ig deposition diseases/Ig light chain amyloidosis (AL)*/localized AL amyloidosis*/light chain and heavy chain deposition disease</td>
<td>Diseases with monoclonal Ig deposition</td>
<td>-</td>
</tr>
<tr>
<td>-</td>
<td>Ig-related AL amyloidosis</td>
<td>Primary amyloidosis</td>
</tr>
<tr>
<td>Monoclonal Ig deposition diseases</td>
<td>Monoclonal Ig deposition disease</td>
<td>Light chain and heavy chain deposition disease</td>
</tr>
<tr>
<td>Heavy chain diseases</td>
<td>Heavy chain diseases</td>
<td>Heavy chain diseases</td>
</tr>
<tr>
<td>Mu heavy chain disease</td>
<td>Mu heavy chain disease</td>
<td>Mu heavy chain disease</td>
</tr>
<tr>
<td>Gamma heavy chain disease</td>
<td>Gamma heavy chain disease</td>
<td>Gamma heavy chain disease</td>
</tr>
<tr>
<td>Alpha heavy chain disease</td>
<td>Alpha heavy chain disease</td>
<td>Alpha heavy chain disease</td>
</tr>
<tr>
<td>
<bold>Plasma cell neoplasms</bold>
</td>
<td>
<bold>Plasma cell neoplasms</bold>
</td>
<td>
<bold>Plasma cell neoplasms</bold>
</td>
</tr>
<tr>
<td>Solitary plasmacytoma of bone/extraosseous plasmacytoma</td>
<td>Plasmacytoma</td>
<td>Plasmacytoma</td>
</tr>
<tr>
<td>Multiple myeloma (plasma cell myeloma)</td>
<td>Plasma cell myeloma</td>
<td>Plasma cell myeloma</td>
</tr>
<tr>
<td>Multiple myeloma with recurrent genetic abnormality [cyclin D (CCND) family translocation, musculoaponeurotic fibrosarcoma (MAF) family translocation, nuclear receptor binding SET domain protein 2 (NSD2) translocation, with hyperdiploidy]</td>
<td>-</td>
<td>-</td>
</tr>
<tr>
<td>-</td>
<td>Plasma cell neoplasms with associated paraneoplastic syndrome</td>
<td>-</td>
</tr>
<tr>
<td>-</td>
<td>Polyneuropathy, organomegaly, endocrinopathy, M-protein, skin changes (POEMS) syndrome</td>
<td>-</td>
</tr>
<tr>
<td>-</td>
<td>TEMPI syndrome</td>
<td>-</td>
</tr>
<tr>
<td>-</td>
<td>Adenopathy and an extensive skin patch overlying a plasmacytoma (AESOP) syndrome</td>
<td>(Same) Except AESOP syndrome not previously included</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Changes from the 2016 WHO classification in the ICC classification, based on the ICC 2022, WHO-HAEM5, and WHO revised 4th edition [<xref ref-type="bibr" rid="B1">1</xref>–<xref ref-type="bibr" rid="B10">10</xref>]. In the ICC, the changes from the 2016 WHO Classification are highlighted with an asterisk. Bold font indicates the principal lymphoma types. TEMPI: telangiectasia-erythrocytosis-monoclonal gammopathy-perinephric-fluid collections-intrapulmonary shunting syndrome; -: no data</p>
</fn>
<fn>
<p>
<italic>Note.</italic> Adapted from “A comparison of the International Consensus and 5th World Health Organization classifications of mature B-cell lymphomas,” by Falini B, Martino G, Lazzi S. Leukemia. 2023;37:18–34 (<uri xlink:href="https://www.nature.com/articles/s41375-022-01764-1">https://www.nature.com/articles/s41375-022-01764-1</uri>). CC BY; “The 5th edition of the World Health Organization Classification of Haematolymphoid Tumours: lymphoid neoplasms,” by Alaggio R, Amador C, Anagnostopoulos I, Attygalle AD, Araujo IBO, Berti E, et al. Leukemia. 2022;36:1720–48 (<uri xlink:href="https://www.nature.com/articles/s41375-022-01620-2">https://www.nature.com/articles/s41375-022-01620-2</uri>). CC BY; “WHO classification of tumours [Internet],” Lyons: International Agency for Research on Cancer; c1965–2024 [cited 2023 Jul 7]. Available from: <uri xlink:href="https://whobluebooks.iarc.who.int/structures/haematolymphoid/">https://whobluebooks.iarc.who.int/structures/haematolymphoid/</uri></p>
</fn>
</table-wrap-foot>
</table-wrap>
<p id="p-8">Among the multiple hematological neoplasias of the classification, the worth entities are the following: hairy cell leukemia-variant (splenic BCL)/leukemia with prominent nucleoli), primary cutaneous marginal zone lymphoproliferative disorder, HBCL with <italic>MYC</italic> and <italic>BCL2</italic> rearrangements, HBCL with <italic>MYC</italic> and <italic>BCL6</italic> rearrangements, LBCL with <italic>IRF4</italic> rearrangement, LBCL with 11q aberration, HHV-8 and Epstein-Barr virus (EBV)-negative primary effusion-based lymphoma (fluid overload-associated LBCL), primary DLBCL of the central nervous system and testis (immune privileged sites), mediastinal gray-zone lymphoma, nodular lymphocyte predominant BCL, EBV-positive mucocutaneous ulcer, primary cold agglutinin disease, and monoclonal Ig deposition diseases (and related).</p>
<p id="p-9">The postulated origin of some of the most relevant mature B-cell neoplasms is shown in <xref ref-type="fig" rid="fig1">Figure 1</xref>. These non-HL subtypes correspond to various stages of B-cell differentiation. For example, FL, BL, and DLBCL originate and/or have a stage of differentiation from mature B lymphocytes of the germinal centers of lymphoid follicles. In FL, the most characteristic molecular change of FL, is the <italic>IGH/BCL2</italic> translocation t(14; 18)(q32; q21) that occurs in the bone marrow of the patients. Later, when the B lymphocytes recirculate within the germinal center, secondary changes occur and lymphoma develops [<xref ref-type="bibr" rid="B5">5</xref>, <xref ref-type="bibr" rid="B13">13</xref>–<xref ref-type="bibr" rid="B15">15</xref>].</p>
<fig id="fig1" position="float">
<label>Figure 1</label>
<caption>
<p>Steps of the physiological B-cell differentiation, and the relationship with the postulated cell-of-origin of the different mature BCLs. +: positive; FDC: fixed-dose combination; TFH: T-follicular helper; Pre: precursor; T<sub>h</sub>: T helper cell</p>
<p>
<italic>Note</italic>. Adapted from “Artificial intelligence predicted overall survival and classified mature B-cell neoplasms based on immuno-oncology and immune checkpoint panels,” by Carreras J, Roncador G, Hamoudi R. Cancers. 2022;14:5318 (<uri xlink:href="https://www.mdpi.com/2072-6694/14/21/5318">https://www.mdpi.com/2072-6694/14/21/5318</uri>). CC BY.</p>
</caption>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="etat-05-1002221-g001.tif"/>
</fig>
<p id="p-10">B-cell neoplasms recapitulate several phases of B-cell development, according to the WHO classification of tumours of hematopoietic and lymphoid tissues, updated 4th edition 2016 [<xref ref-type="bibr" rid="B5">5</xref>]. MCL is caused by pre-germinal B lymphocytes, which are peripheral B cells of the mantle zone; however, some are of post-germinal origin [<xref ref-type="bibr" rid="B16">16</xref>, <xref ref-type="bibr" rid="B17">17</xref>]. FL, BL, and DLBCL develop from GCB lymphocytes. The B lymphocytes of the germinal centers are centrocytes and centroblasts, and are intermingled by numerous follicular T-helper cells, follicular dendritic cells, macrophages, and regulatory T lymphocytes (Treg) [Fork head box P3 (FOXP3)-positive Tregs]. Proliferation, apoptosis, somatic hypermutation (SHM), and Ig switch class recombination (SCR) all occur in germinal centers. BCL of the marginal zone develops during the post-germinal center development stage. Other lymphoma subtypes to mention are CLL/SLL, whose normal counterpart is CD5 molecule (CD5)-positive B lymphocytes with mutated or unmutated Ig heavy variable (<italic>IGHV</italic>) genes [<xref ref-type="bibr" rid="B16">16</xref>], and LPL, which arises from post-follicular B cells that differentiate into plasma cells [<xref ref-type="bibr" rid="B5">5</xref>]. Similarly, plasma cell myeloma is caused by long-lived plasma cells from the post-germinal center [<xref ref-type="bibr" rid="B5">5</xref>]. MALT lymphoma (extranodal MZL of MALT) derives from post-germinal center marginal-zone B cells [<xref ref-type="bibr" rid="B5">5</xref>, <xref ref-type="bibr" rid="B18">18</xref>, <xref ref-type="bibr" rid="B19">19</xref>]. Finally, when <italic>MYC</italic> and <italic>BCL2</italic> are rearranged, HBCL with <italic>MYC</italic> and <italic>BCL2</italic> and/or <italic>BCL6</italic> rearrangements emerge from mature GCB cells, although this is questionable in <italic>MYC</italic> and <italic>BCL6</italic> instances [<xref ref-type="bibr" rid="B5">5</xref>].</p>
</sec>
<sec id="t2-3">
<title>Highlights in diffuse large B-cell lymphoma and FL</title>
<p id="p-11">The changes, i.e., highlights, in the ICI 2022 classification of aggressive BCLs are of special interest [<xref ref-type="bibr" rid="B6">6</xref>]. In this section, 14 subtypes are specified.</p>
<p id="p-12">In DLBCL, NOS, the sub-classification based on the cell-of-origin is maintained, but molecular profiling using the 5 or 7 functional subgroups.</p>
<p id="p-13">The Chapuy-Shipp classification identified 5 groups, C1 to C5, with coordinated genetic signatures in 304 DLBCL samples [<xref ref-type="bibr" rid="B20">20</xref>]. The progression-free survival was different between C0/C1/C4 (associated with favorable prognosis), <italic>versus</italic> C2 (intermediate prognosis), and <italic>versus</italic> C3/C5 (poor prognosis). The C0 cluster was characterized by absence of molecular changes. The C1 cluster was characterized by <italic>BCL6</italic> structural variants (SVs). Cluster C2 by tumor protein 53 (<italic>TP53</italic>) mutations. The C3 cluster was characterized by <italic>BCL2</italic> mutations and SVs that result in a juxtaposition of <italic>BCL2</italic> to Ig heavy chain (<italic>IgH</italic>) enhancer. The C3 cluster also had frequent mutations of lysine methyltransferase 2D (<italic>KMT2D</italic>), CREB binding protein (<italic>CREBBP</italic>), and enhancer of zeste 2 polycomb repressive complex 2 subunit (<italic>EZH2</italic>), and a cell-of-origin GCB-like. The C5 cluster was characterized by 18q and chromosome 3 gains, and mutations of <italic>CD79B</italic>, MYD88 innate immune signal transduction adaptor (<italic>MYD88</italic>), and Pim-1 proto-oncogene, serine/threonine kinase (<italic>PIM1</italic>), and a cell-of-origin ABC-like.</p>
<p id="p-14">The Wright classification [<xref ref-type="bibr" rid="B21">21</xref>] described an algorithm that classified the patients into 7 genetic subtypes (MCD, N1, A53, BN2, ST2, EZB, MYC<sup>+</sup>, and MYC<sup>–</sup>) that aided to develop a rationally targeted therapy of DLBCL on Bruton tyrosine kinase (BTK), phosphoinositide 3-kinase (PI3K), BCL2, Janus kinase (JAK), IRF4, and EZH2 molecules. The MCD subtype was characterized by <italic>MYD88</italic> (L265P), and <italic>CD79B</italic> mutations. The BN2 by <italic>BCL6</italic> fusion and notch receptor 2 (<italic>NOTCH2</italic>) mutations. The EZB by <italic>BCL2</italic> fusion, and <italic>EZH2</italic> and <italic>TNFRSF14</italic> mutations. The ST2 had tet methylcytosine dioxygenase 2 (<italic>TET2</italic>) mutations. The A53 had <italic>TP53</italic>, and the N1 had <italic>NOTCH1</italic> mutations. Among the subtypes, the BN2 associated with a favorable survival.</p>
<p id="p-15">Of note, the work of Lacy et al. [<xref ref-type="bibr" rid="B22">22</xref>] identified 6 groups including MYD88, BCL2, SOCS1/SGK1, TET2/SGK1, and NOTCH2, along with an unclassified group. These groups were comparable to the work of Runge et al. [<xref ref-type="bibr" rid="B23">23</xref>].</p>
<p id="p-16">Among others, additional highlights of the ICI 2022 classification of aggressive BCLs were that LBCL with an 11q aberration entity is still considered provisional, and now it is closer to DLBCL than BL. Nodular lymphocyte-predominant BCL is different from classic HL, and closer to T-cell histiocyte-rich LBCL. The primary DLBCL of the testis is recognized as a specific subtype, such as DLBCL of the central nervous system. HHV-8 and Eptein-Barr virus-negative primary effusion-based lymphoma is a provisional entity. EBV-positive mucocutaneous ulcer changed from a provisional to a definitive entity. And HBCL with MYC rearrangement is divided into cases with <italic>MYC</italic> and <italic>BCL2</italic>, and <italic>MYC</italic> and <italic>BCL6</italic> rearrangements. Of note, in the WHO-HAEM5, the BCL6 rearrangement becomes “less relevant”, and cases with <italic>MYC</italic> and <italic>BCL6</italic> rearrangements are classified as DLBCL, NOS, or HGBL, NOS based on the cytomorphological features.</p>
<p id="p-17">Regarding FL, the difference between the ICI 2022 and WHO-HAEM5 is that in HAEM5 the grading is no longer mandatory in cases of classic FL, and two new FL subtypes are defined, the follicular LBCL (FLBL, the previous FL grade 3B), and FL with uncommon features (uFL). Conversely, the ICI 2022 retained the morphologic grading (grades 1–2, 3A, and 3B).</p>
</sec>
</sec>
<sec id="s3">
<title>Applications of AI in the classification and prognosis of B lymphoid neoplasms</title>
<sec id="t3-1">
<title>Strong and weak AI</title>
<p id="p-18">According to McCarthy, AI is “the science and engineering of making intelligent machines, particularly intelligent computer programs” [<xref ref-type="bibr" rid="B24">24</xref>], and it is a field that combines computer science and data tools to solve problems. It includes both machine-learning and deep-learning techniques. AI is a useful tool for analyzing large amounts of data to make predictions and classifications. AI is divided into two categories: “weak AI” and “strong AI” [<xref ref-type="bibr" rid="B25">25</xref>].</p>
<p id="p-19">Strong AI, also known as artificial general intelligence (AGI), should be indistinguishable from human intelligence; therefore, it is currently a theoretical concept that must pass the Turing test [<xref ref-type="bibr" rid="B26">26</xref>]. Strong AI would solve various problems (security, entertainment, and content creation, as well as behavioral recognition and prediction), eventually teaching itself to solve new ones [<xref ref-type="bibr" rid="B25">25</xref>, <xref ref-type="bibr" rid="B27">27</xref>]. In contrast, weak AI (sometimes known as “narrow”) focuses on restricted sorts of tasks. Weak AI requires humans to give the learning algorithm settings and necessary training data to solve issues accurately [<xref ref-type="bibr" rid="B25">25</xref>, <xref ref-type="bibr" rid="B27">27</xref>].</p>
</sec>
<sec id="t3-2">
<title>Machine learning and artificial neural networks</title>
<p id="p-20">In our research, the AI analyses included several machine learning techniques and artificial neural networks. The machine learning included the C5 algorithm for decision tree, Bayesian network, classification and regression (C &amp; R) tree, Chi-squared (<italic>χ</italic><sup>2</sup>) automatic interaction detection (CHAID) tree, discriminant analysis, nearest neighbor analysis [k-Nearest Neighbor (KNN)], logistic regression, linear support vector machine (LSVM), quick, unbiased, efficient statistical tree (QUEST), random forest, random trees, SVM, tree-AS, and eXtreme Gradient Boosting (XGBoost) linear and tree, among others. The artificial neural networks comprised multilayer perceptron (MLP) and radial basis functions.</p>
<p id="p-21">The description of the different techniques is present in the original publications [<xref ref-type="bibr" rid="B28">28</xref>–<xref ref-type="bibr" rid="B37">37</xref>]. The C5 decision tree predicts only categorical variables; it is characterized as being robust when there is missing data or the model includes a large number of predictors, the training time is relatively short, and has a simple interpretation.</p>
<p id="p-22">The Bayesian network is a graphical model that links the different variables of a dataset (known as nodes) using arcs. For instance, a Bayesian network can be constructed to predict a specific disease based on the presence of different symptoms or data. If information is unavailable, the Bayesian networks are incredibly resilient and produce the best feasible forecast using whatever information is available [<xref ref-type="bibr" rid="B28">28</xref>–<xref ref-type="bibr" rid="B37">37</xref>].</p>
<p id="p-23">The C &amp; R tree node is another type of tree-based classification and prediction method that can handle missing data and large datasets effectively. Unlike the C5 tree, both the target and predictors can be continuous or categorical. The CHAID decision tree uses <italic>χ</italic><sup>2</sup> analysis to calculate the optimal splits. The target variable can be both continuous and categorical, such as in the C &amp; R tree, but can create non-binary splits with more than 2 or more subgroups [<xref ref-type="bibr" rid="B28">28</xref>–<xref ref-type="bibr" rid="B37">37</xref>].</p>
<p id="p-24">The discriminant analysis searches for group memberships based on linear combinations. Nearest Neighbor Analysis recognizes patterns of data and classifies the cases based on their resemblance to other cases. Logistic regression, also known as nominal regression, is similar to linear regression, but the target variable is categorical. LSVM is useful for analyzing large datasets with large numbers of predictors. QUEST is another method of binary classification that creates trees characterized by lower processing time than the C &amp; R tree. The random forest is based on the bagging algorithm, and can handle large datasets and missing data, and can highlight the most relevant predictors [<xref ref-type="bibr" rid="B28">28</xref>–<xref ref-type="bibr" rid="B37">37</xref>].</p>
</sec>
<sec id="t3-3">
<title>Use of machine learning and neural networks in the classification and prognostic assessment of mature B-cell neoplasms</title>
<p id="p-25">AI has the potential to revolutionize biological research and clinical practice. We recently employed weak (narrow) AI to categorize the various subtypes of mature B lymphoid neoplasms and predict patient prognosis. The most important findings from our recent publications that used AI to classify and predict non-HLs are summarized in <xref ref-type="table" rid="t2">Table 2</xref> [<xref ref-type="bibr" rid="B14">14</xref>, <xref ref-type="bibr" rid="B31">31</xref>–<xref ref-type="bibr" rid="B37">37</xref>].</p>
<table-wrap id="t2">
<label>Table 2</label>
<caption>
<p>Applications of AI in hematopathology research</p>
</caption>
<table frame="hsides" rules="groups">
<thead>
<tr>
<th>
<bold>Summary</bold>
</th>
<th>
<bold>Available website address</bold>
</th>
<th>
<bold>Reference</bold>
</th>
</tr>
</thead>
<tbody>
<tr>
<td>This research integrated previous studies and added a new analysis of macrophages, including three-dimensional (3D) rendering. The focus was on immuno-oncology markers.</td>
<td>
<ext-link xlink:href="https://doi.org/10.3390/cancers14215318" ext-link-type="uri">https://doi.org/10.3390/cancers14215318</ext-link>
</td>
<td>[<xref ref-type="bibr" rid="B14">14</xref>]</td>
</tr>
<tr>
<td>This research predicted the prognosis of FL using 120 different and independent artificial neural networks. The random number generator was used to generate the different overall survival predictions.</td>
<td>
<ext-link xlink:href="https://doi.org/10.3390/biomedinformatics2020017" ext-link-type="uri">https://doi.org/10.3390/biomedinformatics2020017</ext-link>
</td>
<td>[<xref ref-type="bibr" rid="B31">31</xref>]</td>
</tr>
<tr>
<td>The overall survival of MCL was predicted using two strategies. First, a dimensionality reduction was based on the previously identified genes. Second, on immuno-oncology panels. The results were correlated with the Lymphoma/Leukemia Molecular Profiling Project (LLMPP) MCL35 proliferation assay.</td>
<td>
<uri xlink:href="https://doi.org/10.3390/healthcare10010155">https://doi.org/10.3390/healthcare10010155</uri>
</td>
<td>[<xref ref-type="bibr" rid="B32">32</xref>]</td>
</tr>
<tr>
<td>The overall survival and cell-of-origin molecular subtypes of DLBCL were predicted using artificial neural networks and a pan-cancer immune-oncology panel of 730 genes.</td>
<td>
<ext-link xlink:href="https://doi.org/10.3390/cancers13246384" ext-link-type="uri">https://doi.org/10.3390/cancers13246384</ext-link>
</td>
<td>[<xref ref-type="bibr" rid="B33">33</xref>]</td>
</tr>
<tr>
<td>A neural network predicted (classified) several non-HL subtypes, including FL, MCL, DLBCL, BL, and MZL. All the genes of the array were used and a cancer transcriptome panel. The survival of a pan-cancer series was also performed.</td>
<td>
<uri xlink:href="https://doi.org/10.3390/make3030036">https://doi.org/10.3390/make3030036</uri>
</td>
<td>[<xref ref-type="bibr" rid="B15">15</xref>]</td>
</tr>
<tr>
<td>This research used immunohistochemical analysis and AI to predict the survival of DLBCL, with a focus on the protein and gene expression of the colony stimulating factor 1 receptor (CSF1R).</td>
<td>
<uri xlink:href="https://doi.org/10.3390/hemato2020011">https://doi.org/10.3390/hemato2020011</uri>
</td>
<td>[<xref ref-type="bibr" rid="B34">34</xref>]</td>
</tr>
<tr>
<td>This research analyzed the predictive value of caspase-8 (CASP8) and related markers [cleaved CASP3, cleaved poly(ADP-ribose) polymerase 1 (PARP1), BCL2, TP53, MDM2, MYC, Ki67, E2F1, CDK6, MYB, LMO2, and tumor necrosis factor-alpha-induced protein 8 (TNFAIP8)] in DLBCL using immunohistochemical stainings and several machine learning and artificial neural networks.</td>
<td>
<ext-link xlink:href="https://doi.org/10.3390/biomedinformatics1010003" ext-link-type="uri">https://doi.org/10.3390/biomedinformatics1010003</ext-link>
</td>
<td>[<xref ref-type="bibr" rid="B35">35</xref>]</td>
</tr>
<tr>
<td>In DLBCL, several AI techniques were used for multidimensionality reduction to predict the overall survival of the patients. As a result, two markers were highlighted, programmed cell death1 ligand 1 (PD-L1/CD274) and IKAROS, which were later tested by immunohistochemistry in an independent series of cases.</td>
<td>
<uri xlink:href="https://doi.org/10.3390/ai2010008">https://doi.org/10.3390/ai2010008</uri>
</td>
<td>[<xref ref-type="bibr" rid="B36">36</xref>]</td>
</tr>
<tr>
<td>Using a MLP and 25 genes, the overall survival of DLBCL was predicted. In the final model, the prognosis was predicted using <italic>MYC</italic>, <italic>BCL2</italic>, and enolase 3 (<italic>ENO3</italic>).</td>
<td>
<ext-link xlink:href="http://mj-med-u-tokai.com/pdf/450107.pdf" ext-link-type="uri">http://mj-med-u-tokai.com/pdf/450107.pdf</ext-link>
</td>
<td>[<xref ref-type="bibr" rid="B37">37</xref>]</td>
</tr>
</tbody>
</table>
</table-wrap>
<p id="p-26">The first publication of 2020 analyzed the gene expression of 100 cases of DLBCL that were stratified according to a risk score based on the expression of <italic>CD163</italic> (high <italic>versus</italic> low), which is a marker of M2-like tumor-associated macrophages (TAMs) [<xref ref-type="bibr" rid="B37">37</xref>]. The statistical method was an artificial neural network (MLP). The gene expression data of 54,614 gene-probes were used as input (predictors), and the output (predicted variable) was the overall survival outcome as dead versus alive. As a result, 25 genes were highlighted. Further correlation with already known genes with predictive value in DLBCL using neural networks, gene-set enrichment analysis (GSEA), and Cox regression analysis managed to reduce the list of 25 to only three genes, <italic>MYC</italic> (cell cycle), <italic>BCL2</italic> (apoptosis), and <italic>ENO3</italic> (cell metabolism) [<xref ref-type="bibr" rid="B37">37</xref>].</p>
<p id="p-27">The second publication improved the analysis algorithm [<xref ref-type="bibr" rid="B36">36</xref>]. Instead of predicting only one variable (the overall survival), the algorithm also predicted many other clinicopathological variables that had prognostic relevance in DLBCL, such as cell-of-origin molecular subtype, age, lactate dehydrogenase (LDH) ratio, Eastern Cooperative Oncology Group (ECOG) performance status, clinical stage, and extra-nodal disease (among others). As a result, the list of pathogenic genes was refined, and after several steps of dimensionality reduction, a final set of 16 genes was highlighted. The clinical relevance of these 16 genes was tested using several machine learning techniques, GSEA, functional network association analysis, and conventional overall survival analysis [<xref ref-type="bibr" rid="B36">36</xref>]. Then, two markers that were highlighted (<italic>PD-L1</italic> and <italic>IKAROS</italic>), were successfully validated at the protein level by immunohistochemistry in an independent series of cases from Tokai University Hospital [<xref ref-type="bibr" rid="B36">36</xref>].</p>
<p id="p-28">The use of machine learning and artificial neural networks was also applied to data obtained from digital image quantification of protein levels of several markers, using immunohistochemistry in DLBCL [<xref ref-type="bibr" rid="B35">35</xref>]. In this project, the aim was to evaluate the prognostic value of CASP8 and to correlate with other related markers such as CASP3, cleaved PARP, BCL2, TP53, MDM2, MYC, Ki67, E2F1, CDK6, MYB, LMO2, and TNFAIP8. The results showed that high expression of CASP8 correlated with a favorable prognosis for the patients [<xref ref-type="bibr" rid="B35">35</xref>].</p>
<p id="p-29">Artificial neural networks were also used to predict the subtype of non-HL using gene expression data. In this analysis, all the genes of the array or a pan-cancer panel were used to predict the lymphoma subtype with high performance. Therefore, weak AI successfully made lymphoma diagnosis without the use of histological images [<xref ref-type="bibr" rid="B15">15</xref>]. Of note, work on MCL was also carried out [<xref ref-type="bibr" rid="B32">32</xref>], and the same methodology was applied to non-tumour immunological conditions such as celiac disease and ulcerative colitis [<xref ref-type="bibr" rid="B28">28</xref>, <xref ref-type="bibr" rid="B29">29</xref>].</p>
<p id="p-30">In summary, machine learning and neural networks were used to predict the overall survival of the patients of the most frequent subtypes of hematological neoplasia using gene expression data. Additionally, the gene expression was used as a predictor of different lymphoma subtypes. <xref ref-type="fig" rid="fig2">Figure 2</xref> shows the prediction of several mature B lymphoid neoplasms using an artificial neural network, the overall survival outcome (dead <italic>versus</italic> alive) using a Bayesian network, and the patients with DLBCL using transcriptomic data that highlighted <italic>ENO3</italic>, <italic>MYC</italic>, and <italic>BCL2</italic> genes [<xref ref-type="bibr" rid="B15">15</xref>, <xref ref-type="bibr" rid="B29">29</xref>–<xref ref-type="bibr" rid="B37">37</xref>]. AI has many applications, including the prediction of non-Hogkin lymphoma subtypes, and the prognosis of the patients. The basic structure of an artificial neural network. A neural network includes a minimum of three layers. An input layer with the predictors, a hidden layer, and an output layer (<xref ref-type="fig" rid="fig2">Figure 2A</xref>). A neural network was used to predict several non-HL subtypes, FL, MCL, DLBCL, BL, and MZL. The input layer included the gene expression of a cancer transcriptome panel of 1,769 genes (<xref ref-type="fig" rid="fig2">Figure 2B</xref>). A Bayesian network was used to predict the prognosis of DLBCL. This is a graphical model that depicts the variables (known as nodes; both predictors and targets) and their connections (referred to as links and/or arcs). Although connections between nodes are made, the arcs do not always indicate a straight cause-effect relationship. This sort of network is effective when there is missing information, and it is robust since it predicts based on whatever input is included (<xref ref-type="fig" rid="fig2">Figure 2C</xref>). A neural network (MLP) was used to predict the prognosis of DLBCL using gene expression data. As a result, the most relevant genes were highlighted on the basis of their normalized importance for predicting the overall survival of the patients (<italic>n</italic> = 25), such as aldolase, fructose-bisphosphate B (<italic>ALDOB</italic>), disco interacting protein 2 homolog A (<italic>DIP2A</italic>), <italic>TNFAIP8</italic>, RNA polymerase III subunit H (<italic>POLR3H</italic>), <italic>ENO3</italic>, kinesin family member 23 (<italic>KIF23</italic>), and <italic>GGA3</italic>. Using these 25 genes and a risk-score formula, the overall survival of the patients was predicted with high accuracy. The correlation with other known relevant genes showed that patients with high expression of <italic>ENO3</italic>, <italic>MYC</italic>, and <italic>BCL2</italic> were associated with poor prognosis. Examples of cases with high expression of ENO3, MYC, and BCL2 are shown by immunohistochemistry (<xref ref-type="fig" rid="fig2">Figure 2D</xref>). This figure is based in part on our previous work on AI in non-HLs.</p>
<fig id="fig2" position="float">
<label>Figure 2</label>
<caption>
<p>Use of AI to classify and predict non-HL. (A) Basic structure of an artificial neural network; (B) a neural network was used to predict several non-HL subtypes, FL, MCL, DLBCL, BL, and MZL using a cancer transcriptome panel; (C) a Bayesian network was used to predict the prognosis of DLBCL; (D) a neural network (MLP) was used to predict the overall survival of the patients with DLBCL using gene expression data. The immunohistochemistry of one of the most relevant markers is shown (original magnification 200×). Cum: cumulative</p>
<p>
<italic>Note</italic>. Adapted from “Artificial intelligence predicted overall survival and classified mature B-cell neoplasms based on immuno-oncology and immune checkpoint panels,” by Carreras J, Roncador G, Hamoudi R. Cancers. 2022;14:5318 (<uri xlink:href="https://www.mdpi.com/2072-6694/14/21/5318">https://www.mdpi.com/2072-6694/14/21/5318</uri>). CC BY.</p>
</caption>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="etat-05-1002221-g002.tif"/>
</fig>
</sec>
</sec>
<sec id="s4">
<title>Lymphoma classification using cell-of-origin markers: rapid communication</title>
<p id="p-31">Machine learning and artificial neural networks can be used to classify several mature B-cell neoplasms. Here, we propose a method of classifying lymphoma subtypes based on gene expression. The publicly available dataset GSE132929 [<xref ref-type="bibr" rid="B38">38</xref>] was used in this analysis. The input variables (predictors) were genes that are currently used in the diagnosis by hematopathologists at the protein level by immunohistochemistry, and that reflect the cell-of-origin and the postulated cell counterparts: <italic>CD5</italic> (T-cell marker), CD3 epsilon subunit of T-cell receptor complex (<italic>CD3E</italic>, T-cell marker), <italic>BCL2</italic> apoptosis regulator, <italic>BCL6</italic> transcription repressor (germinal center marker), <italic>IRF4</italic> (<italic>MUM-1</italic>, plasma cell differentiation), membrane metalloendopeptidase [<italic>MME</italic>, <italic>CD10</italic>, common acute lymphoblastic leukemia antigen (CALLA), germinal center marker], <italic>CD19</italic> (B-lymphocyte marker), membrane spanning 4-domains A1 [<italic>MS4A1</italic> (<italic>CD20</italic>, B-lymphocyte marker with role in the development and differentiation of B-cells into plasma cells)], <italic>CD79a</italic> molecule (<italic>CD79A</italic>, B lymphocyte antigen receptor complex), SRY-box transcription factor 11 (<italic>SOX11</italic>, transcriptional activator), myeloid cell nuclear differentiation antigen (<italic>MNDA</italic>, marker of myelomonocytic and marginal zone B cells), and Fc receptor-like 4 [<italic>FCRL4</italic> (<italic>IRTA1</italic>, function of memory B-cells)].</p>
<p id="p-32">The aim was to build a new model, a standard model, based on the MLP. The method was performed as we have recently described [<xref ref-type="bibr" rid="B28">28</xref>, <xref ref-type="bibr" rid="B29">29</xref>]. The input layer included the predictors (12 nodes). The number of hidden layers was automatically computed. The output was the lymphoma subtypes as FL, MCL, DLBCL, BL, and MZL. The neural network managed to predict several lymphoma subtypes with an overall percent correct of 79%. For lymphoma subtypes, the percentage was FL (85%), MCL (88%), DLBCL (79%), BL (80%), and MZL (44%). The characteristics of the network and the classification matrix are shown in <xref ref-type="fig" rid="fig3">Figure 3</xref>. Of note, MZL had a low predictive accuracy using as predictors the several genes. The same markers by immunohistochemistry at the protein level are being used by histopathologists to diagnose this lymphoma subtype. But it is not an easy diagnosis and, in some cases, the final diagnosis is “indolent” mature BCL unspecified.</p>
<fig id="fig3" position="float">
<label>Figure 3</label>
<caption>
<p>Use of AI to classify mature B-cell neoplasms using cell-of-origin markers. (A) Structure of the artificial neural network. The predictors were genes that represent several cell-of-origin markers usually used by histopathologists at lymphoma diagnosis; (B) classification matrix. The overall percentage of correct classification was 79%, being FL and MCL being the best predicted (85% and 88%, respectively)</p>
</caption>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="etat-05-1002221-g003.tif"/>
</fig>
<p id="p-33">Neural networks predict a target variable, which can be continuous or categorical, based on one or more predictors. Neural networks search for patterns in the data. The MLP is a feed-forward, supervised learning model [<xref ref-type="bibr" rid="B36">36</xref>]. The formulas are shown in <xref ref-type="fig" rid="fig4">Figure 4</xref>. Further information of MLP calculations is found in the following references [<xref ref-type="bibr" rid="B39">39</xref>–<xref ref-type="bibr" rid="B42">42</xref>].</p>
<fig id="fig4" position="float">
<label>Figure 4</label>
<caption>
<p>The basics of neural networks. Artificial neural networks have the ability of function approximation. Functions are “input-output” machines, in which a set of predictors (x) that are numbers are taken and an output (y) is created. The function is what defines the relationship between x and y. A simple form of neural network is the feed-forward network, also known as MLP. The MLP network is comprised of several units called neurons. The neurons take many inputs (x), but only produce one output (y). Each input is multiplied by its own weight (w), and in the equation one extra weight (bias) is added. After addition (Σ), the product is passed to an activation function to add nonlineality such as the sigmoid function (σ). The point is that each neuron is responsible for learning a small piece of the overall function. A MLP is a neural network. The architecture characterized by an input layer that contains the predictors, a hidden layer that contains unobservable nodes, and an output layer that contains the responses</p>
</caption>
<graphic xmlns:xlink="http://www.w3.org/1999/xlink" xlink:href="etat-05-1002221-g004.tif"/>
</fig>
</sec>
<sec id="s5">
<title>Conclusions</title>
<p id="p-34">The classification of lymphoid neoplasms reflects a consensus among hematopathologists, geneticists, and clinicians on both updates to well-established subtypes and the addition of some new entities. Morphology, immunophenotype, clinical features, and molecular pathology analyses, such as next-generation sequencing are all incorporated into the classification. AI has advanced rapidly recently, and its role in medicine is becoming increasingly important. AI combines computer science and datasets to make predictions or classifications based on input data [<xref ref-type="bibr" rid="B27">27</xref>]. This paper showed several examples of the use of machine learning and neural networks to predict the prognosis and to classify mature B-cell neoplasms. Prediction of lymphoma subtypes based on conventional cell-of-origin markers was also calculated using a neural network. In the future, it is expected that AI will be incorporated into the classification as another bioinformatics tool to analyze complex data.</p>
</sec>
</body>
<back>
<glossary>
<title>Abbreviations</title>
<def-list>
<def-item>
<term>AI</term>
<def>
<p>artificial intelligence</p>
</def>
</def-item>
<def-item>
<term>BCLs</term>
<def>
<p>B-cell lymphomas</p>
</def>
</def-item>
<def-item>
<term>BL</term>
<def>
<p>Burkitt lymphoma</p>
</def>
</def-item>
<def-item>
<term>C &amp; R</term>
<def>
<p>classification and regression</p>
</def>
</def-item>
<def-item>
<term>CASP8</term>
<def>
<p>caspase-8</p>
</def>
</def-item>
<def-item>
<term>DLBCL</term>
<def>
<p>diffuse large B-cell lymphoma</p>
</def>
</def-item>
<def-item>
<term>EBV</term>
<def>
<p>Epstein-Barr virus</p>
</def>
</def-item>
<def-item>
<term>ENO3</term>
<def>
<p>enolase 3</p>
</def>
</def-item>
<def-item>
<term>EZH2</term>
<def>
<p>enhancer of zeste 2 polycomb repressive complex 2 subunit</p>
</def>
</def-item>
<def-item>
<term>FL</term>
<def>
<p>follicular lymphoma</p>
</def>
</def-item>
<def-item>
<term>GCB</term>
<def>
<p>germinal center B</p>
</def>
</def-item>
<def-item>
<term>HBCL</term>
<def>
<p>high-grade B-cell lymphoma</p>
</def>
</def-item>
<def-item>
<term>HHV-8</term>
<def>
<p>human herpesvirus 8</p>
</def>
</def-item>
<def-item>
<term>HL</term>
<def>
<p>Hodgkin lymphoma</p>
</def>
</def-item>
<def-item>
<term>ICC</term>
<def>
<p>International Consensus Classification</p>
</def>
</def-item>
<def-item>
<term>Ig</term>
<def>
<p>immunoglobulin</p>
</def>
</def-item>
<def-item>
<term>IRF4</term>
<def>
<p>interferon regulatory factor 4</p>
</def>
</def-item>
<def-item>
<term>KSHV</term>
<def>
<p>Kaposi’s sarcoma-associated herpesvirus</p>
</def>
</def-item>
<def-item>
<term>LBCL</term>
<def>
<p>large B-cell lymphoma</p>
</def>
</def-item>
<def-item>
<term>LPL</term>
<def>
<p>lymphoplasmacytic lymphoma</p>
</def>
</def-item>
<def-item>
<term>MCL</term>
<def>
<p>mantle cell lymphoma</p>
</def>
</def-item>
<def-item>
<term>MYD88</term>
<def>
<p>myeloid differentiation primary response 88</p>
</def>
</def-item>
<def-item>
<term>MZL</term>
<def>
<p>marginal zone lymphoma</p>
</def>
</def-item>
<def-item>
<term>NOS</term>
<def>
<p>not otherwise specified</p>
</def>
</def-item>
<def-item>
<term>TNFAIP8</term>
<def>
<p>tumor necrosis factor-alpha-induced protein 8</p>
</def>
</def-item>
<def-item>
<term>Treg</term>
<def>
<p>regulatory T</p>
</def>
</def-item>
<def-item>
<term>TP53</term>
<def>
<p>tumor protein 53</p>
</def>
</def-item>
<def-item>
<term>WHO</term>
<def>
<p>World Health Organization</p>
</def>
</def-item>
</def-list>
</glossary>
<sec id="s6">
<title>Declarations</title>
<sec>
<title>Author contributions</title>
<p>JC: Conceptualization, Investigation, Writing—original draft, Writing—review &amp; editing. RH: Investigation. NN: Investigation, Supervision. All authors have read and approved the submitted version.</p>
</sec>
<sec sec-type="COI-statement">
<title>Conflicts of interest</title>
<p>The authors declare that they have no conflicts of interest.</p>
</sec>
<sec>
<title>Ethical approval</title>
<p>Not applicable.</p>
</sec>
<sec>
<title>Consent to participate</title>
<p>Not applicable.</p>
</sec>
<sec>
<title>Consent to publication</title>
<p>Not applicable.</p>
</sec>
<sec sec-type="data-availability">
<title>Availability of data and materials</title>
<p>The datasets for this study are available upon request to Joaquim Carreras (<email>joaquim.carreras@tokai.ac.jp</email>).</p>
</sec>
<sec>
<title>Funding</title>
<p>Joaquim Carreras was funded by the Ministry of Education, Culture, Sports, Science and Technology (MEXT); and the Japan Society for the Promotion of Science (JSPS) [KAKEN 23K06454, 15K19061, 18K15100, 24590430]; and the Tokai University School of Medicine research incentive assistant plan [2021-B04]. This study was funded by the Cancer Research UK [47550]; UFS project PKAG/309 [C92/A8329]. Rifat Hamoudi is funded by ASPIRE, the technology program management pillar of Abu Dhabi’s Advanced Technology Research Council (ATRC), via the ASPIRE Precision Medicine Research Institute Abu Dhabi (ASPIREPMRIAD) [VRI-20-10]. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</p>
</sec>
<sec>
<title>Copyright</title>
<p>© The Author(s) 2024.</p>
</sec>
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